Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00372 ATGGTGGGCGGCGGCGGCGAGGAAAATGAAGATCGGGCGGCGCGTGTGCGACTGGGGAAGTACGAGCTGGGGAAAACTCTGGGGCATGGGAACTTCGGAAAGGTCAAATTAGCTATCAATTTTGAAACGGATCAGCCTTTTGCTGTCAAGGTCCTCGACAAGACCAAGATCATCGACCTCAATATCTCCGATCAGTTTAAAAGGGAAATACGGACGCTGAAGCTTCTCAAGCATCCAAATATAGTGAGGCTACACGAGGTGTTGGCCAGTAAAAGCAAAATTTACATGGTTCTCGAGTATGTGAACGGGGGAGAATTGTTTAATAGAATCGCATCCAACGGGAAGCTGTCGGAAGATCGAGGTAGAAAAATCTTCCAACAGTTAATTGACGGTGTGAGTCACTGCCATTGGAAAGGCGTTTACCATAGGGATCTTAAGCTTGAGAACATATTGGTTGATGCGAAGGGAAATATTAAGATATCTGATTTTGGCTTAAGTGCATTACCCGAGCATTTAAGGGTAAGTACCCGTGTACTTTTGTTTATAACGATTTTGCAACGATTTTCCGTGTTGGAATTTCAGATCTTGAAGGGTGAAACGCAGCTACCCAAATGGCTATCACAAGGGGCTCAAAATTTGATCAAAAGGATTCTTGATCCTAACCCTATTTCTCGGATAACTATGGCAAGTATCAAAATGGACGAGTGGTTTAGAAAGGATTACAATCCAGCCTACCTTGACGATGACGAGGAGGATATAAACACTCAAAGTGAGGCCATCCCGACGCATCAAGAGCCATCTTATCTCGAGGAAAGGAGTCCGAGATCTCCCACGACTATAAACGCTTTTGAACTGATTGGAATGTCATCATGTCTAGATCTTTCAGGCTTATTTGAGAAAGAGGATATTTCTGAGAGGAAGGTTAGATTTACAACCATTCACTCAGCCAAAGAAGACATCCTCAATCGGATGGAGGATCTTGTCAAAGAAATGGGGTTTCTTGTCCACAAGAAAGAAGGACGGTTGAAAGTAACGAGAGAGCATAAGGGGCAGAATGGTGTGGCCATTATACTCTCAGTATCAGCAAAGGTTTTTGAGATAAGCCCTTCACTATATGTTATAGAATTAAGAAAGGTGCAAGGAGAATCATCTTCATATAGACAGGTGCCCTTTCTTCCTTTCTCGAGATACGTGATTTTACTCTTTAACCTAATCGGTGGTTCGGTTTTGTTCGATAAGCTATCTTTTGAAGTTTTCGGGTTTTGA 1266 43.05 MVGGGGEENEDRAARVRLGKYELGKTLGHGNFGKVKLAINFETDQPFAVKVLDKTKIIDLNISDQFKREIRTLKLLKHPNIVRLHEVLASKSKIYMVLEYVNGGELFNRIASNGKLSEDRGRKIFQQLIDGVSHCHWKGVYHRDLKLENILVDAKGNIKISDFGLSALPEHLRVSTRVLLFITILQRFSVLEFQILKGETQLPKWLSQGAQNLIKRILDPNPISRITMASIKMDEWFRKDYNPAYLDDDEEDINTQSEAIPTHQEPSYLEERSPRSPTTINAFELIGMSSCLDLSGLFEKEDISERKVRFTTIHSAKEDILNRMEDLVKEMGFLVHKKEGRLKVTREHKGQNGVAIILSVSAKVFEISPSLYVIELRKVQGESSSYRQVPFLPFSRYVILLFNLIGGSVLFDKLSFEVFGF 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2376557 2382848 - Carg05579-RA Car17g00372 164744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00372 421 Pfam NAF domain 277 337 IPR004041 GO:0007165
Car17g00372 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Car17g00372 421 ProSiteProfiles NAF domain profile. 275 299 IPR018451 GO:0007165
Car17g00372 421 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Car17g00372 421 Pfam Protein kinase domain 21 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00372 421 ProSiteProfiles Protein kinase domain profile. 21 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00372 Car-Chr17:2376557 Car13g00407 Car-Chr13:6590710 1.17E-106 dispersed
Car14g01370 Car-Chr14:11579298 Car17g00372 Car-Chr17:2376557 2.85E-139 wgd
Car17g00372 Car-Chr17:2376557 Car06g01352 Car-Chr6:9681729 5.46E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89471 PF00069 Pkinase 1.30E-46 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00372 K07198 - csv:101206030 548.895