Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g00389 | ATGGATCGGCGGGATCCGATGGCGTTATCTGGGTCACAATCTTTCTATATACAGAGGGGAATGAGTAACTCTGGCTCCGGAGGACAGGGGTTGCGTTCCTCTCCTAACCCAAATGTGGCATTTCAGACCAACACTGGTGGGAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCCTTTCACCTTATGGTGGCAATGTTGGGGCTCAATCTGGTGGAATGATGGGTAGCGAACCGGTGAAACGGAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTTTCTCCTTCCCCTTCTGCTGTGAATCCAGCCATTGTAGGTTCTTCACCGAAGCGGGGAAGGGGTCGCCCGCCTGGCTCGGGAAAGAAGCAACAATTGGCTTCTCTTGGTGAAACACTTTCTGGGTCAGCTGGGATGGGTTTTACTCCACATGTTATCACCATTGGAGTAGGAGAAGATATTGCTGCCAAAATTACGTCGTTTTCGCAGCAGGGACCGAGAGTTGTCTGCATCTTGTCAGCAAATGGTGCTGTCTCTACCGTTACACTTCGTCAGCCTTCGAGTTCGGGAGGCACCGTCACATACGAGGGGCGTTTTGAGATAATATGTCTATCAGGCTCATATGCTCTTGGAGAAGCTGTTGGTTCTCGGAACCGCAGTGGTGGTCTGAGTGTCTCCCTTGCCAGCCCTGATGGTCGTGTCGTTGGTGGCGGAGTAGGAGGAGCACTTATCGCAGCAACCCCGGTTCAGGTGATCGTAGGGAGCTTCATGTGGGGTGGTTCGAAGTCGAAGTACAAGAAGAGGGAAGCTATTGAAGGCGTGATCGACTCGGATCAACAGGCAGTAGATCATGCAGTTGCTATAGCAAACGTGCAACAGAATCAGAATCTGACATCGACATCCTCGGTTAGTATGTGGCCGTCATCGCAGTCTTTGGACATGCGCAATGCCCATATCGACATCGATCTGATGCGCGGGTGA | 1005 | 52.24 | MDRRDPMALSGSQSFYIQRGMSNSGSGGQGLRSSPNPNVAFQTNTGGNNVGSGLPMDPNPALSPYGGNVGAQSGGMMGSEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPAIVGSSPKRGRGRPPGSGKKQQLASLGETLSGSAGMGFTPHVITIGVGEDIAAKITSFSQQGPRVVCILSANGAVSTVTLRQPSSSGGTVTYEGRFEIICLSGSYALGEAVGSRNRSGGLSVSLASPDGRVVGGGVGGALIAATPVQVIVGSFMWGGSKSKYKKREAIEGVIDSDQQAVDHAVAIANVQQNQNLTSTSSVSMWPSSQSLDMRNAHIDIDLMRG | 334 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 2588607 | 2592203 | - | Carg05596-RA | Car17g00389 | 164761 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g00389 | 334 | MobiDBLite | consensus disorder prediction | 98 | 112 | - | - | |
| Car17g00389 | 334 | ProSiteProfiles | PPC domain profile profile. | 145 | 286 | IPR005175 | - | |
| Car17g00389 | 334 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 151 | 264 | IPR005175 | - | |
| Car17g00389 | 334 | MobiDBLite | consensus disorder prediction | 1 | 135 | - | - | |
| Car17g00389 | 334 | MobiDBLite | consensus disorder prediction | 11 | 52 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car08g00794 | Car17g00389 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g01608 | Car-Chr1:13213409 | Car17g00389 | Car-Chr17:2588607 | 1.28E-70 | dispersed | |
| Car02g01225 | Car-Chr2:8297950 | Car17g00389 | Car-Chr17:2588607 | 1.83E-88 | dispersed | |
| Car16g01092 | Car-Chr16:9376559 | Car17g00389 | Car-Chr17:2588607 | 1.41E-50 | dispersed | |
| Car17g00389 | Car-Chr17:2588607 | Car02g00752 | Car-Chr2:5508278 | 9.16E-66 | dispersed | |
| Car15g01102 | Car-Chr15:8671648 | Car17g00389 | Car-Chr17:2588607 | 2.24E-74 | wgd | |
| Car17g00389 | Car-Chr17:2588607 | Car08g00794 | Car-Chr8:5327427 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g00389 | - | - | csv:101203138 | 583.948 |