Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00399 ATGGCCGGTAGCTGTGGAGACGATGTGGTTTATATGGCTGTGGGAAATGATGTAAACGAGTGCAGATTGAATTTGGTCTATGCTATAAAGCACTTAGGCGGGCGGAGGATTTGCGTCGTACATGTTCATGAGCCAGCGAAGTTAATTCCATTCTTGGGAACACAATTTTTGGCAAGTTCTATGAAAGAAAAGGAAGTAAACGCCTACCGCGAACGTGAGAGGCAGGATGCAAATAATATACTTGATGGATTCCTTTTCCTCTGTCACCAAGCTGGGGTTTGGGCAGAGAAACTTTATTTTGAATCAGACAAGATTAAGAAGGGAATTGTCGAGCTCGTCTCCCTTCATGGAATTAGAAGGCTTATTATGGGTGCAGCAGCGGACAAGTATTACTCAAGAAAAATGACAAAAATCAGATCGAGGAAAGCTATGTATGTTCACCTGAAAGCACCAGCTTTCTGTCAAATTCAATTTGTTTGCAACGGGCAGTTAATTCGCACTAGGGAAGCTTGTCCACAAGAAGCTCATGTAGATGTCCCTCCACCATCACCTCAGTCACAAAACGTCAACGGGGCATGTTGGAGACCAATGGAGTCTGGCCAATTCAATGGGAGCAGAATACAGAGTCCATCAATTGTTCTGGAAAGGCTTTCGATTTCGAAGTTAGTTTCGAATGATAGTGGGACTTCGAGCCCTTTTGAGCGTTCATATTCACCAAGTTCATCTAGTGGATGTCTTGATGCTGCATCTTCAAGGACTGAGGAAGATGAGTATGGAGTAGGATTAAATTCACCTCTTCTGTTGAAAGATGTTGCTCCTAACTCATCTCCTCTCCATTTGTCGGGATTCCAGCAAGACGAAAGTGCTGATGATATTTTATACATTCAACTTGAGAAATCAATAACCGAAGCAGCAAATGCCAAGCGAGAAGCTTTTAGAGAGGCAGTGAAGCGAGCTCAAGCTGAAAATGAACTTGGGAATGCTATTTTCAGGGCTAAATTTTATGAAGACTTATATGCTGGAGAGGCAAGAGAAAGGAAAGATGTTGAAGAAGCGCTGTCAAAAGAAAGGGAAGAACTTGAGAATGTGAAGAACCAAGTAAATAAAATGATGGAGGAGCTCCAAGTCTCCCGAAACAGGGGATTAGAATTAGAGAATCAAATTGCAGGATCTGATCAGATGGTGAAGGAGTTGGAGCAGAAGATTCTCTCAGCGATAGAACTGCTGCATAACTACAAAAATGATCGAGATGAGTTACTGAAGCAACGAGATGAAGCACTCAAAGAAGTGGATGACATAAGGACAAGACAAGTAGAGGCCAGATCTAAACATACTGCTCAAGTATTCTCTGAGTTCTCGTTCTCAGAAATTGCAGAAGCCACCCGGAAATTCGATCCCTCGCTTAAGATTGGGGAGGGTACCCATGGAAGCATGTATAAAGGTCTGCTATATAACACTGAGGTTTGCATAAAAATGTTCGGTTCTCATAACTTGCAGAACCCAGTGGAGTTTCAACGTGAGGTTGATGTATTGAGTATTCTGAGACATCCCAATATTGCCACGCTCATTGGAGTCTGTCCGGAGGCTTGCATTCTTGTTTATGACTATTTTCCTAATGGAAGTCTAGAAGATAGGCTAGCCTGTAAGGACAATTCTTCTCCGTTGTCATGGAAAACTCGAATACGGATCGCTTCAGAATTATGCTCAGCTCTTATATTCATTCATTCGAATAAAATTTGCAAGATCATTCATGGTGACTTGAAGCCTTTGAATGTACTATTAGATGCAAATTACGTTCCTAAACTTGCAGGATTTGGAAGTTGTCATTTTTTGCCTCATGATGAGAAGTTGAGTTACAATGAAAATATATCTGCCAAGTATGGCGTGAAGAGCAATCCTGAATTTCCTCTCACAACAAAATTGGACGTTTTTTCATTTGGCATGGTATTGTTAAGTTTGTTAACTGGAAAATCATACTTGAGAATGAAAGAAGATGTCCAGTTCGCCATAGAGGAACGAAAATTGAAAGATGTATTGGATCCACGAGCGGGAGACTGGCCGTTCGTGCAGGCCGAACAGTTGGCTCAGTTGGCATTGAGGTGCTGCAATAGAAATAGTATGTACAGGCCAGACCTTGTGTCTGATGTGTGGAGAGTACTTGAGCCAATGAAGGCTTCTTGTGGAGGTTCGGTTTCTGTATCCCTAAGCTTTGGGGATCTGCAGGTGCAACCTCCTCCTTATTTCCTATGTCCTATTTTTCAGGAAGTCATGGAGGATCCTCATGTAGCGGCCGACGGGTTTACCTATGAGGCAGAGGCATTGAGAGGATGGTTAGACAGTGGACACAACACGTCGCCGATGACAAACCTAAGGCTCGAACACCAAAACCTCGTTCCTAACCGTGCTCTTCGTTCTGTAATTCAAGAATGGTTGCATCAGCAGCAGTAG 2448 42.89 MAGSCGDDVVYMAVGNDVNECRLNLVYAIKHLGGRRICVVHVHEPAKLIPFLGTQFLASSMKEKEVNAYRERERQDANNILDGFLFLCHQAGVWAEKLYFESDKIKKGIVELVSLHGIRRLIMGAAADKYYSRKMTKIRSRKAMYVHLKAPAFCQIQFVCNGQLIRTREACPQEAHVDVPPPSPQSQNVNGACWRPMESGQFNGSRIQSPSIVLERLSISKLVSNDSGTSSPFERSYSPSSSSGCLDAASSRTEEDEYGVGLNSPLLLKDVAPNSSPLHLSGFQQDESADDILYIQLEKSITEAANAKREAFREAVKRAQAENELGNAIFRAKFYEDLYAGEARERKDVEEALSKEREELENVKNQVNKMMEELQVSRNRGLELENQIAGSDQMVKELEQKILSAIELLHNYKNDRDELLKQRDEALKEVDDIRTRQVEARSKHTAQVFSEFSFSEIAEATRKFDPSLKIGEGTHGSMYKGLLYNTEVCIKMFGSHNLQNPVEFQREVDVLSILRHPNIATLIGVCPEACILVYDYFPNGSLEDRLACKDNSSPLSWKTRIRIASELCSALIFIHSNKICKIIHGDLKPLNVLLDANYVPKLAGFGSCHFLPHDEKLSYNENISAKYGVKSNPEFPLTTKLDVFSFGMVLLSLLTGKSYLRMKEDVQFAIEERKLKDVLDPRAGDWPFVQAEQLAQLALRCCNRNSMYRPDLVSDVWRVLEPMKASCGGSVSVSLSFGDLQVQPPPYFLCPIFQEVMEDPHVAADGFTYEAEALRGWLDSGHNTSPMTNLRLEHQNLVPNRALRSVIQEWLHQQQ 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2644490 2650626 + Carg05606-RA Car17g00399 164771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00399 815 Coils Coil 339 436 - -
Car17g00399 815 MobiDBLite consensus disorder prediction 224 249 - -
Car17g00399 815 Pfam U-box domain 745 814 IPR003613 GO:0004842|GO:0016567
Car17g00399 815 ProSiteProfiles U-box domain profile. 743 815 IPR003613 GO:0004842|GO:0016567
Car17g00399 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Car17g00399 815 Pfam Protein kinase domain 469 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00399 815 ProSiteProfiles Protein kinase domain profile. 464 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00399 815 Coils Coil 302 322 - -
Car17g00399 815 MobiDBLite consensus disorder prediction 224 250 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car14g01849 Car17g00399 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00904 Car-Chr6:6998994 Car17g00399 Car-Chr17:2644490 0 dispersed
Car16g00105 Car-Chr16:644714 Car17g00399 Car-Chr17:2644490 4.38E-163 dispersed
Car17g00399 Car-Chr17:2644490 Car18g01163 Car-Chr18:11394110 2.24E-27 dispersed
Car17g00399 Car-Chr17:2644490 Car14g01849 Car-Chr14:14344847 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89472 PF00069 Pkinase 3.70E-30 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00399 - - csv:101202751 1307.35