Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00412 ATGACTTGTCTTCTTAGAAACCAAGTTAACCATGGCGGCATTCTCCTCCTCCTCCTCCTCCTCTCTCTGCCACTTCTCTCCGTCGCCCTCTCCGACGCCGAAGCTTCATTTATCGTTCGCCGCCAACTTAAATCTTTAGAAGATTACGAAAACCTCCCAGATGACTTCACATACGAACTCGACATTCCCGACACTTTCCCTAATGAGAGGTTGAAAAAGGCCTACGTTGCCCTTCAAGCTTGGAAATTAGCCATTTACTCCGACCCTTTTAACATGACCGCCAATTGGGTTGGTGCCGATGTCTGCTCTTATGTCGGCGTCTTTTGTACCACGGCGCTTGATGACTCAACCATTGAAGTTGTCGCCGGCATTGATTTGAACCATGGCGATATTGCCGGCCATTTGGTGCCGGAATTAGCCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCCAATAGATTCTGTGGGATCGTTCCTCGTAGCTTCTCCAAGCTCACCCTCATGTTTGAATTTGATATCAGCACCAACCGCTTTGTCGGCCGTTTCCCTGAGGTTGTTCTCGAATGGTCCGTCGCTAAGTACCTCGATCTCAGGTTCAATAACTTCGAAGGAGAAATCCCACCTGCTCTGTTCACCAAGGAATTCGATGCCATTTTCTTAAACAATAACAGATTCAATTCCTTCATCCCACATACCATCGGAAACTCCACCGTCTCCGTCGTGTCCTTCGCCTACAACGAATTCCATGGCTGCATTCCTAACACCATCGGCCATATGCCCAACCTCAACCAGGCCCTCTTTCTCGGCAACAACCTCAGCGGGTGTTTCCCTTACGAGATGGGGCAGCTTGTGAATATGACACTTATTGATGTTAGTGACAATTTGTTTGTCGGCGAGCTGCCTAAATCGTTGCCGGGGCTGCATAGTTTGGAGGTTTTGGATGTTAGTAACAATGAATTGAGGGGCTCTGTTTTTGGTGGTGTTTGTGAGTTGCCTAAATTGATTTACTTTAATTGTTCGAGTAATTATTTTAGTGAGGAAGATGCGGCGTGTGTTGGGTCTAAAGAATCTAAGAATTCTTTTGATGATGTTGGGAATTGTTTGGGGAATCGACCGGGGCAGAGAGATGCGGCCAAGTGTAGCTCTGTTTTGGATAAACCCATGGAGTGTGGTGGTTGTGCTGATGATCCATTTGTTCAGTCTCCATCGCCCAGGTTTAGGCCGCCGCCGTCACCATCTGTGGGTGAAATCCCTTACGTAGAAGTTGGGTCTCCACCATCTCCGATTGTGTTTCCACCGCCAACATCTCACACACGAACGCCCTCTGTTCCATCCTCACCGCCACCAGTCCACTCTCCACCACCGCCCGACCAGTCTCCACCACCCCCCGTCCAGTCTCCACCACCCCCCCTCTACTCTCCGCCACCCCCCCTCTACTCTCCGCCACCTCCCCCTCTACCCTCCGCACCTCCTCTACTCTCGCTCCCCCGTCTACTCTCCGGCCTCCCCGTCTACTCTCCGCCACCTCCCGTCTACTCTCCGCCTCCCCCCGTCTACTCTCGCCACCCCCGTCTACTCTCCGCCACCCACGTCTACTCTCGCACCCCGTCCTACTCTCCGCCTCCCCGTCATCTCTCCCGCCACCTTCCGTCTACTCTCCGCCCCTCCGTCTACTCTCCGCCACCCCCCGTCTACTCTCCGCCACCTCCCGTCTACTCTCCGCCACCTCCCGTCTACTCTCCGCCACCTCCCGTCTACTCTCCGCCTCCCCCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCACCACCAGAACAATCTCCGCCACCACCCGTACACTCTCCCCCCCCACCCGCTTTACTCTCGCCACCACCCCTACACTCCTCCCCCCCACCCGTTTTACTCTCCACCCCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAGTCTCCACCCCCACCTGTTTACTCTCCACCGCCACCAGAACAATCTCCACCTCCACCCGTTCACTCTCCACCGCCACCAGAACAATCTCCACCTCCACCCAACAATCTCCACCTCCACCCGTTCACTCTCCGCCCCCACCCGTTTACTCTCCACCGCCACCAGAAAAATCTCCGCCCCCACCCGTTCAATCTCCGCCGCCACCAGAACAATCTCCGCCGCCACCAGAACAATCTCCGCCACCCGTTCAATCTCCGCCCCCGCCAGAACAATCTCCGCCCCCACCAGAACAATCTCCGCCCCCACCAGAACAATCTCCGCCGCCACCAGAGCAATCTCCACCTCCACCAGAACAATCTCCACCTCCTGCTCCCGATTCTTCTCCACCGCCAGCGTTCGAGGACTTAATTCTCCCACCAAATATCGGCTTCCAGTATTCATCGCCGCCTCCACCACAGTTTCCGGGCTACTAA 2442 54.87 MTCLLRNQVNHGGILLLLLLLSLPLLSVALSDAEASFIVRRQLKSLEDYENLPDDFTYELDIPDTFPNERLKKAYVALQAWKLAIYSDPFNMTANWVGADVCSYVGVFCTTALDDSTIEVVAGIDLNHGDIAGHLVPELALITDLALFHINSNRFCGIVPRSFSKLTLMFEFDISTNRFVGRFPEVVLEWSVAKYLDLRFNNFEGEIPPALFTKEFDAIFLNNNRFNSFIPHTIGNSTVSVVSFAYNEFHGCIPNTIGHMPNLNQALFLGNNLSGCFPYEMGQLVNMTLIDVSDNLFVGELPKSLPGLHSLEVLDVSNNELRGSVFGGVCELPKLIYFNCSSNYFSEEDAACVGSKESKNSFDDVGNCLGNRPGQRDAAKCSSVLDKPMECGGCADDPFVQSPSPRFRPPPSPSVGEIPYVEVGSPPSPIVFPPPTSHTRTPSVPSSPPPVHSPPPPDQSPPPPVQSPPPPLYSPPPPLYSPPPPPLPSAPPLLSLPRLLSGLPVYSPPPPVYSPPPPVYSRHPRLLSATHVYSRTPSYSPPPRHLSRHLPSTLRPSVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVHSPPPPALLSPPPLHSSPPPVLLSTPTRTISTPTRLLSTATRTVSTPTCLLSTATRTISTSTRSLSTATRTISTSTQQSPPPPVHSPPPPVYSPPPPEKSPPPPVQSPPPPEQSPPPPEQSPPPVQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPAPDSSPPPAFEDLILPPNIGFQYSSPPPPQFPGY 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2744096 2746620 + Carg05619-RA Car17g00412 164784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00412 813 MobiDBLite consensus disorder prediction 503 522 - -
Car17g00412 813 MobiDBLite consensus disorder prediction 635 693 - -
Car17g00412 813 MobiDBLite consensus disorder prediction 556 634 - -
Car17g00412 813 MobiDBLite consensus disorder prediction 694 792 - -
Car17g00412 813 MobiDBLite consensus disorder prediction 426 493 - -
Car17g00412 813 MobiDBLite consensus disorder prediction 426 813 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00412 - - - cpep:111806609 781.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00780 Car-Chr8:5110909 Car17g00412 Car-Chr17:2744096 0 dispersed
Car09g00168 Car-Chr9:835696 Car17g00412 Car-Chr17:2744096 7.17E-146 dispersed
Car17g00412 Car-Chr17:2744096 Car05g01248 Car-Chr5:11663486 9.66E-122 dispersed
Car17g00412 Car-Chr17:2744096 Car08g00779 Car-Chr8:5095935 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car01g01460 . 61 399 Leucine-rich Repeat extension Gene Families AT1G62440 63.1 1.6e-56 218.4
Car09g00168 . 53 398 Leucine-rich Repeat extension Gene Families AT1G62440 61.8 3.2e-52 204.1
Car14g01568 CST 43 368 Leucine-rich Repeat extension Gene Families AT1G62440 63.3 1.6e-48 191.8
Car05g01248 CCT,CST 71 240 Leucine-rich Repeat extension Gene Families AT1G62440 72.4 3.2e-44 177.6
Car08g00780 . 36 260 Leucine-rich Repeat extension Gene Families AT1G62440 57.5 4.1e-44 177.2
Car12g01214 CCT,CST 68 419 Leucine-rich Repeat extension Gene Families AT1G62440 60.5 5.6e-41 166.8
Car10g00558 CCT 65 234 Leucine-rich Repeat extension Gene Families AT1G62440 67.6 1.8e-39 161.8
Car11g00470 . 53 225 Leucine-rich Repeat extension Gene Families AT1G62440 65.9 3.1e-39 161.0
Car17g00412 . 42 225 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 1.3e-37 155.6
Car05g01248 CCT,CST 14 417 Leucine-rich Repeat extension Gene Families AT4G13340 72.8 1.7e-66 251.5
Car12g01214 CCT,CST 13 419 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 4.1e-65 246.9
Car11g00470 . 26 397 Leucine-rich Repeat extension Gene Families AT4G13340 74.5 5.9e-64 243.0
Car10g00558 CCT 38 408 Leucine-rich Repeat extension Gene Families AT4G13340 73.7 4.0e-60 230.3
Car14g01568 CST 43 370 Leucine-rich Repeat extension Gene Families AT4G13340 71.1 6.6e-55 213.0
Car09g00168 . 21 261 Leucine-rich Repeat extension Gene Families AT4G13340 65.1 9.5e-54 209.1
Car01g01460 . 17 262 Leucine-rich Repeat extension Gene Families AT4G13340 58.5 2.9e-50 197.6
Car08g00780 . 26 260 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 9.2e-49 192.6
Car08g00779 . 26 150 Leucine-rich Repeat extension Gene Families AT4G13340 58.4 3.6e-37 154.1
Car06g01193 CST 24 363 Leucine-rich Repeat extension Gene Families AT4G13340 61.5 5.2e-36 150.2
Car12g01214 CCT,CST 43 415 Leucine-rich Repeat extension Gene Families AT3G24480 74.4 8.6e-72 268.5
Car05g01248 CCT,CST 46 417 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 1.2e-70 264.6
Car11g00470 . 28 400 Leucine-rich Repeat extension Gene Families AT3G24480 73.5 1.4e-69 261.2
Car10g00558 CCT 31 409 Leucine-rich Repeat extension Gene Families AT3G24480 71.1 4.9e-67 252.7
Car09g00168 . 16 399 Leucine-rich Repeat extension Gene Families AT3G24480 62.4 4.6e-57 219.5
Car14g01568 CST 43 370 Leucine-rich Repeat extension Gene Families AT3G24480 67.2 1.4e-53 208.0
Car01g01460 . 25 262 Leucine-rich Repeat extension Gene Families AT3G24480 60.7 5.2e-53 206.1
Car08g00780 . 17 260 Leucine-rich Repeat extension Gene Families AT3G24480 57.8 1.9e-50 197.6
Car17g00412 . 30 427 Leucine-rich Repeat extension Gene Families AT3G24480 51.5 9.3e-42 168.7
Car08g00779 . 17 150 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 4.8e-38 156.4
Car06g01193 CST 24 363 Leucine-rich Repeat extension Gene Families AT3G24480 58.1 3.4e-36 150.2
Car14g01568 CST 15 369 Leucine-rich Repeat extension Gene Families AT3G22800 68.5 1.9e-68 257.3
Car06g01193 CST 17 360 Leucine-rich Repeat extension Gene Families AT3G22800 63.5 1.5e-49 194.5
Car09g00168 . 59 391 Leucine-rich Repeat extension Gene Families AT3G22800 61.7 1.3e-45 181.4
Car01g01460 . 63 393 Leucine-rich Repeat extension Gene Families AT3G22800 54.5 2.0e-38 157.5
Car11g00470 . 65 393 Leucine-rich Repeat extension Gene Families AT3G22800 61.6 1.1e-36 151.8
Car01g01460 . 31 401 Leucine-rich Repeat extension Gene Families AT5G25550 52.6 9.0e-41 165.2
Car05g01248 CCT,CST 57 416 Leucine-rich Repeat extension Gene Families AT5G25550 63.0 3.4e-40 163.3
Car12g01214 CCT,CST 54 413 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.1e-38 158.3
Car10g00558 CCT 51 231 Leucine-rich Repeat extension Gene Families AT5G25550 71.3 5.4e-38 156.0
Car06g01193 CST 23 356 Leucine-rich Repeat extension Gene Families AT5G25550 65.6 1.6e-37 154.5
Car11g00470 . 39 219 Leucine-rich Repeat extension Gene Families AT5G25550 70.7 3.5e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00412 Car_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0