Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00415 ATGGAGCCCGGTCCTTTTAATCACCACATCAGGGGAGTGCCTACCCATGGGGGTCGATACATTCAGTACAATATCTATGGCAATCTATTTGAAGTTCCTAGGAAGTATATTCCTCCCATAAGGCCTGTTGGAAGAGGAGCTTATGGAATTGTCTGTGCTGCTTTGAATTCAGAAACAAATGAAGAGGTTGCAATTAAGAAGGTTGGCAATGCATTTGACAATAGAATTGACGCTAAAAGAACCTTGCGAGAAATCAAGCTTCTTCTACACATGGAACATGATAATATTATTGGTCTTGAAGATATTATAAGACCTCCTCAGAAAGAGACTTTCAATGATGTATACCTTGTTTATGAATTGATGGATACTGATCTGAATCAGATAATACGGTCCAACGAATCGTTGACTGATGAACATTGTCGGTACTTTGTGTACCAGTTGTTACGAGGGCTAAAATACATACATTCTGCTAACGTTCTACACCGTGATTTGAAACCGAGCAATTTGTTCGTGAATGCAAATTGTGACCTGAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACTGATTTTATGACCGAGTATGTTGTTACTCGGTGGTATCGTGCACCTGAATTGCTTCTTAATTGTTCAGAATACAGTGGAGCAATAGATATCTGGTCTGTTGGCTGTATATTTGGTGAAATTATGCACAGACAACCACTGTTTCCTGGAAGAGACTATGTTCATCAGCTAAAACTTATTACTGAGCTCATTGGATCACCCGATGACTCGAGCCTCGGATTCTTACGAAGCGACAATCCACAAAAATATTTTAGACTTCTTCCTCACTTCCCCAGGCAACAGTTTTCCACTCGATTTCCCACCATGTCTCCTGCTGCAATCGACTTGCTGGAGAAGATGCTCGTCTTCGATCCTACGAAGCGCATTACAGTTGATGAGGCGCTGTGCCATCCTTACTTAGCACCTCTTCATGATACCAATGTGGAGCCAGTATGTCCAAGGCCCTTCAGTTTTGATTTCGAGCAGCCATCGTATACCGAAGAACACATTAAGGAACTTGTATGGCGAGAATCCATGAAGTTCAACCCGGATCCCGCTAACTAA 1113 42.05 MEPGPFNHHIRGVPTHGGRYIQYNIYGNLFEVPRKYIPPIRPVGRGAYGIVCAALNSETNEEVAIKKVGNAFDNRIDAKRTLREIKLLLHMEHDNIIGLEDIIRPPQKETFNDVYLVYELMDTDLNQIIRSNESLTDEHCRYFVYQLLRGLKYIHSANVLHRDLKPSNLFVNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYSGAIDIWSVGCIFGEIMHRQPLFPGRDYVHQLKLITELIGSPDDSSLGFLRSDNPQKYFRLLPHFPRQQFSTRFPTMSPAAIDLLEKMLVFDPTKRITVDEALCHPYLAPLHDTNVEPVCPRPFSFDFEQPSYTEEHIKELVWRESMKFNPDPAN 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2757354 2761746 - Carg05622-RA Car17g00415 164787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00415 370 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Car17g00415 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Car17g00415 370 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00415 370 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Car17g00415 370 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00415 Car-Chr17:2757354 Car08g01053 Car-Chr8:7204705 4.43E-107 dispersed
Car15g01126 Car-Chr15:8878926 Car17g00415 Car-Chr17:2757354 0 wgd
Car17g00415 Car-Chr17:2757354 Car08g00773 Car-Chr8:5057199 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89473 PF00069 Pkinase 1.90E-69 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00415 K20600 - csv:101215189 692.96