Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00502 ATGGAATTTCTTACCAAATCAAACGCCTACTCGGAGGAGGAAGAAGAGGAAGAAGAAGAGGAGGAAGATGATGAAATCCGGGGTGTTGCATGCGATTTCTTCCCAAATTCACGCACCCAAAACCAGGAATGGGTTCAACACCCTCCAATAAATCAGCCCTTGGATCACCACCCTCTCATGGACTTATCCCTCCGGATGGAAACTAATGGGTTTGGCGTTGTGGAGAGAGAGCACATGTTCGACAAGGTTGTCACTCCAAGCGATGTCGGCAAATTAAACCGTTTGGTCATCCCCAAACAACACGCCGAGAAATACTTCCCTTTGGACTCTGCCACCAACGACAAGGGCCTCATCTTGAACTTTGAGGACCCTAATGGAAAGCCCTGGCGCTTTCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTGATGACCAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAGCTCGATGCAGGCGACGTCGTTTCCTTTCACCGTGGCCTTGGCGATTCCGCTAGGGATCACCTTTTCATCGACTGGCGCCGCCGTCCTAACGCCCCAACTCCTCCTCCTCCTCCTCACCACCACTTCTCCAACCCTCCTCTCCTCTTCCTCCCACAATCCCTCCGCTGGGCCACCGCCCGCCACTTGCCTCCACCGGCGCAGCCACCGCCTCACCACCGCCTCTATTCCAATTACGCCTTCGAAATCCCTAATTTGGGTATGCCTCATAACAACAATTCTTCCATGTATTATTTTAGACCCACCTCCATGTCCTCCTCTTCTTCGGAGCTTGTTGTTCATAGTGAAGGGTCTTCCATGGGGATTAAGAAACCCACCTCCGGTGCAGCGAAACGGCTGAGACTCTTCGGAGTAAACATGGAATGTGCTGCAGAGGATGGAGGAGGAGGAGGAGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGATCTGTCAAACGGCGGCGTTTCAAGGAGAGGGAAACAACCCTTCTCGTTGA 1044 53.07 MEFLTKSNAYSEEEEEEEEEEEDDEIRGVACDFFPNSRTQNQEWVQHPPINQPLDHHPLMDLSLRMETNGFGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSATNDKGLILNFEDPNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFHRGLGDSARDHLFIDWRRRPNAPTPPPPPHHHFSNPPLLFLPQSLRWATARHLPPPAQPPPHHRLYSNYAFEIPNLGMPHNNNSSMYYFRPTSMSSSSSELVVHSEGSSMGIKKPTSGAAKRLRLFGVNMECAAEDGGGGGGEEEEEEEEEEEEEEEEEEEEEEEEICQTAAFQGEGNNPSR 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4446191 4447234 + Carg26116-RA Car17g00502 164874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00502 347 Coils Coil 305 335 - -
Car17g00502 347 Coils Coil 1 21 - -
Car17g00502 347 MobiDBLite consensus disorder prediction 303 334 - -
Car17g00502 347 MobiDBLite consensus disorder prediction 1 26 - -
Car17g00502 347 ProSiteProfiles B3 DNA-binding domain profile. 80 185 IPR003340 GO:0003677
Car17g00502 347 MobiDBLite consensus disorder prediction 11 26 - -
Car17g00502 347 MobiDBLite consensus disorder prediction 298 347 - -
Car17g00502 347 Pfam B3 DNA binding domain 80 184 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01205 Car-Chr15:9362991 Car17g00502 Car-Chr17:4446191 2.58E-63 dispersed
Car18g00968 Car-Chr18:10229397 Car17g00502 Car-Chr17:4446191 2.73E-45 dispersed
Car17g00502 Car-Chr17:4446191 Car02g00707 Car-Chr2:5225614 5.97E-67 transposed
Car17g00502 Car-Chr17:4446191 Car16g00537 Car-Chr16:3397351 6.95E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5050 PF02362 B3 1.00E-28 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00502 - - cmos:111436350 558.525