Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car17g00502 | ATGGAATTTCTTACCAAATCAAACGCCTACTCGGAGGAGGAAGAAGAGGAAGAAGAAGAGGAGGAAGATGATGAAATCCGGGGTGTTGCATGCGATTTCTTCCCAAATTCACGCACCCAAAACCAGGAATGGGTTCAACACCCTCCAATAAATCAGCCCTTGGATCACCACCCTCTCATGGACTTATCCCTCCGGATGGAAACTAATGGGTTTGGCGTTGTGGAGAGAGAGCACATGTTCGACAAGGTTGTCACTCCAAGCGATGTCGGCAAATTAAACCGTTTGGTCATCCCCAAACAACACGCCGAGAAATACTTCCCTTTGGACTCTGCCACCAACGACAAGGGCCTCATCTTGAACTTTGAGGACCCTAATGGAAAGCCCTGGCGCTTTCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTGATGACCAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAGCTCGATGCAGGCGACGTCGTTTCCTTTCACCGTGGCCTTGGCGATTCCGCTAGGGATCACCTTTTCATCGACTGGCGCCGCCGTCCTAACGCCCCAACTCCTCCTCCTCCTCCTCACCACCACTTCTCCAACCCTCCTCTCCTCTTCCTCCCACAATCCCTCCGCTGGGCCACCGCCCGCCACTTGCCTCCACCGGCGCAGCCACCGCCTCACCACCGCCTCTATTCCAATTACGCCTTCGAAATCCCTAATTTGGGTATGCCTCATAACAACAATTCTTCCATGTATTATTTTAGACCCACCTCCATGTCCTCCTCTTCTTCGGAGCTTGTTGTTCATAGTGAAGGGTCTTCCATGGGGATTAAGAAACCCACCTCCGGTGCAGCGAAACGGCTGAGACTCTTCGGAGTAAACATGGAATGTGCTGCAGAGGATGGAGGAGGAGGAGGAGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGATCTGTCAAACGGCGGCGTTTCAAGGAGAGGGAAACAACCCTTCTCGTTGA | 1044 | 53.07 | MEFLTKSNAYSEEEEEEEEEEEDDEIRGVACDFFPNSRTQNQEWVQHPPINQPLDHHPLMDLSLRMETNGFGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSATNDKGLILNFEDPNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFHRGLGDSARDHLFIDWRRRPNAPTPPPPPHHHFSNPPLLFLPQSLRWATARHLPPPAQPPPHHRLYSNYAFEIPNLGMPHNNNSSMYYFRPTSMSSSSSELVVHSEGSSMGIKKPTSGAAKRLRLFGVNMECAAEDGGGGGGEEEEEEEEEEEEEEEEEEEEEEEEICQTAAFQGEGNNPSR | 347 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 4446191 | 4447234 | + | Carg26116-RA | Car17g00502 | 164874 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car17g00502 | 347 | Coils | Coil | 305 | 335 | - | - | |
Car17g00502 | 347 | Coils | Coil | 1 | 21 | - | - | |
Car17g00502 | 347 | MobiDBLite | consensus disorder prediction | 303 | 334 | - | - | |
Car17g00502 | 347 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Car17g00502 | 347 | ProSiteProfiles | B3 DNA-binding domain profile. | 80 | 185 | IPR003340 | GO:0003677 | |
Car17g00502 | 347 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - | |
Car17g00502 | 347 | MobiDBLite | consensus disorder prediction | 298 | 347 | - | - | |
Car17g00502 | 347 | Pfam | B3 DNA binding domain | 80 | 184 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car15g01205 | Car-Chr15:9362991 | Car17g00502 | Car-Chr17:4446191 | 2.58E-63 | dispersed | |
Car18g00968 | Car-Chr18:10229397 | Car17g00502 | Car-Chr17:4446191 | 2.73E-45 | dispersed | |
Car17g00502 | Car-Chr17:4446191 | Car02g00707 | Car-Chr2:5225614 | 5.97E-67 | transposed | |
Car17g00502 | Car-Chr17:4446191 | Car16g00537 | Car-Chr16:3397351 | 6.95E-67 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5050 | PF02362 | B3 | 1.00E-28 | CL0405 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car17g00502 | - | - | cmos:111436350 | 558.525 |