Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00506 ATGGAGCTGGATGGCATCGAGGGCGTGCCATCCATGGATGTGATGGACGAGGAGGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCCATTTCCAAGCCTCGGATCAACAATAACGACAATCCCACCACCACAAGTGTTCACGAGCTTCTCGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGCCCCAATGGTCATACCCTCTGTTCTTCATGTAAAACAAGGGTAGACAACCGTTGTCCGACGTGCAGACAAGAGCTCGGCGATATCAGGTGTCTAGCGTTAGAGAAAATAGCCGAATCGCTTAAACTGGCTTGTAAATTCTGCACGTTCGGGTGCCCGGAGATATTGCCTTACTACAGCAAACTCAAACACGAGTCTGCCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGTGACGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAACCCATGCGAAGTCGAAAATGCTACATGGATGCTGACTGTGTTTCACTGTTTTGGGCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCGGTTTACATGGCGTTTCTCCGATTCATGGGGGACGAAACGGATGCTCGAAACTACAGTTACAGCCTTGAGGTGGGTGGAAATGGGAGGAAGTTGATATGGGAGGGCAACCCTCGAAGCATTCGTGACAACCACAAGAAAGTTCGAGACAGCCACGATGGCCTCATTATACAACGAAACATGGCGCTCTTCTTTTCGGGTGGAGAAAGGAAAGAGCTGAAGCTTCGGATCACAGGACGGATTTGGAAAGAACAGAATAAACAGTAA 915 47.43 MELDGIEGVPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4494282 4496984 + Carg26120-RA Car17g00506 164878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00506 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 96 IPR013083 -
Car17g00506 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 302 - -
Car17g00506 304 CDD Sina 167 295 - -
Car17g00506 304 CDD RING-HC_SIAHs 51 89 - -
Car17g00506 304 Pfam Seven in absentia protein family 95 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Car17g00506 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 160 IPR013083 -
Car17g00506 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Car17g00506 304 SUPERFAMILY TRAF domain-like 106 298 - -
Car17g00506 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT3 1 302 - -
Car17g00506 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270
Car17g00506 304 SUPERFAMILY RING/U-box 47 93 - -
Car17g00506 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 294 IPR008974 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00044 Car-Chr16:313640 Car17g00506 Car-Chr17:4494282 2.06E-180 dispersed
Car17g00506 Car-Chr17:4494282 Car18g01246 Car-Chr18:11869814 4.89E-174 dispersed
Car04g02220 Car-Chr4:18032859 Car17g00506 Car-Chr17:4494282 3.10E-19 transposed
Car17g00506 Car-Chr17:4494282 Car08g00096 Car-Chr8:556330 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00506 K04506 - csv:101209363 644.039