Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g00511 | ATGGACGGCGGCAGACCATCGAGCACCGGGTTCTTGTCCTGGCGGCGGACCTTGAGCTCGAGATTCGCGCTTCCTTTGATTCAAGACGCCGCCAATTTGATCATGGAACATCGCGGCGTAATCTTCGGTGACTGTGCCGAACCACGAGTCGATGATGAGGAGGACGAGAATGGATACGACCGTCGGGTTTTTTTGCGGAATGGGTCGTCCTTCATCAAGCCTATTTTGGTACTCGACTTGTTCTGGAATTTGTTCTTCGTTTTTGTGTCCGTGATTGTGCTGGTACTGTCTGCTGAAGAGAAACCTTCCGCTCCTTTGAGATTATGGCTTTCGGGTTATGCTGTCCAGTGCCTTCTCCATGTCTTTTTTGTGTTCTTTGCCTACTTTAGAAGGAGTTCTCGCTATCGATTTGTGTTTGAGAATCGTGTGGCTCAGGATGAACTTCGCCTTTCTCATAATCGAATAAGGTTGGCAGTGGTTTTCCTAGCCTTTGATGTGTTCTTTATTATCTTCTGCACTGGGATGGCTTTTGTTGGTTTCTTTACTGTTTGCTGCATAATACCATTTTTAGCATATGGCTATACCATGACATTCCTAGAAGGTGCCTCTGAAGATGAAATTAGAGCACTTCCGAAGTACAGGTTTCGCCAAGACAATCCACTCGAGTCGTTCGACAGTGACAAGAAACATGAAGCATGCTGCATATGCCTTGCCCAGTACGTACATGGAGTACAATTGTGCATGCTTCCCTGTAGTCATCATTTCCATACTCGATGCATTGTCAAATGGCTTCGAATAAACGCAACCTGCCCCCTCTGCAAGTTCAGCGTCGGACATGGCGATTCCTTGGTCTGA | 855 | 47.13 | MDGGRPSSTGFLSWRRTLSSRFALPLIQDAANLIMEHRGVIFGDCAEPRVDDEEDENGYDRRVFLRNGSSFIKPILVLDLFWNLFFVFVSVIVLVLSAEEKPSAPLRLWLSGYAVQCLLHVFFVFFAYFRRSSRYRFVFENRVAQDELRLSHNRIRLAVVFLAFDVFFIIFCTGMAFVGFFTVCCIIPFLAYGYTMTFLEGASEDEIRALPKYRFRQDNPLESFDSDKKHEACCICLAQYVHGVQLCMLPCSHHFHTRCIVKWLRINATCPLCKFSVGHGDSLV | 284 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 4616280 | 4619386 | - | Carg26125-RA | Car17g00511 | 164883 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g00511 | 284 | Pfam | Ring finger domain | 232 | 274 | IPR001841 | - | |
| Car17g00511 | 284 | ProSiteProfiles | Zinc finger RING-type profile. | 233 | 274 | IPR001841 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car06g00939 | Car17g00511 | CCT | |
| Car06g01024 | Car17g00511 | CCT | |
| Car14g01816 | Car17g00511 | CCT | |
| Car14g01737 | Car17g00511 | CCT | |
| Car08g00136 | Car17g00511 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car16g00969 | Car-Chr16:8084760 | Car17g00511 | Car-Chr17:4616280 | 2.50E-36 | dispersed | |
| Car17g00511 | Car-Chr17:4616280 | Car06g00939 | Car-Chr6:7258309 | 8.65E-15 | dispersed | |
| Car17g00511 | Car-Chr17:4616280 | Car14g00446 | Car-Chr14:2341757 | 1.79E-80 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g00511 | - | - | csv:101214166 | 475.707 |