Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00518 ATGTTCGCACATTTCATTCTTCCGCACAGACCTTACTTTTCTGTTAAATCTGAATTTTGGGGTAAGAATTTGGATTTTCGGAACAGAAATGATAGTTTTAGTGATAATTCAAGAAAATCTCATGTGTATTTTCAACCGATTAGAGCTGGTGTGAAATGGAGGAAGGAGCTTCCGTTTGATAATGTAATACAGAGGGATAAGAAGCTGAAATTGGTTACTCGGATTAGGAAGATTCTAGTTCAACATCATGATAATGTTATGTCACTTAGGGGTTTAGGTAAATTCAGGAGAGATTTAGGTGTACAGGAAAAGACGAGGCTAATTGAGTTGTTGAAGATGTTCCCTGCTGTATTTGAGATTGTAGAAGAAGAAGCGTTTTCTTTGAAATTTAAATTGACGGAAGAGGCTGAAAGGTTGTACTTCGAGGAGATGAAGATCAGAAATGAAATGGAAGGTTTGTTGGTTACTAAGCTGAGGAAGCTACTCATGATGTCTGCTGATAAGCGGATATTGTTGGAGAAAATTGCACATTTGAGGACTGATTTTGGTCTTCCTTCCGAGTTTCGTGACACGATTTGCCATCGTTATCCTCAGTACTTTAGAGTTGTGGCGACCGAGCACGGTCCAGCTCTCGAATTGACACACTGGGATCCTGAACTTGCTGTTTCTGCAGCAGAGTTAGCCGATGAGGAGAATCGAGCAAGAGAATTGGAAGAGAAGAATTTGATTATTGACCGACCGTTGAAGTTTAATCGAGTGAAGCTACCTAAGGGGCTTAAGCTTTCGAAGAATGATATGAGGAAAATGAATGAGTTTAGGGACATTCCTTATATCTCTCCGTATTCTGATTTCTCAGGGATTAAGGCAGGTACACCCCAGAAAGAGAAACATGCTTGTGGGGTTGTTCATGAGATTTTAAGCCTTACACTTGAGAAGAGAACTCTTGTTGATCATTTTACTCATTTCCGGGAGGAGTTTAGATTCTCCCAGCAGTTGAGGGGGATGCTAATAAGGCATCCCAATATGTTTTATGTCTCGTTGAAAGGGGATAAAAACTCAGTTTTCCTCAGAGAAGCATATCGCGATTCTCAGTTGATCGACAAAGATCGGTTGTTAATCGTAAAGGAGAAGTTTCGAGGTCTTGTGGCTGTTCCTCAATTCAAAGGCAGAGGAGCTCCCAAAAGTGACACGAATTGGCAAGAAACCAATCATGGAGATGATATGAGAGGTGAAGAATGGTCTGATGTCGACGATGACGATGATGAATTTGACAACGATGGTGAGGATGACTGGATTGATGAACAGATCAATAACTTGGAAATGGCTGATCAGAGGCTTCTTTCTCCTCATGCATTACCCGATGGACGGCCCCAAGAAAGATGGTGA 1386 41.2 MFAHFILPHRPYFSVKSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEAFSLKFKLTEEAERLYFEEMKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATEHGPALELTHWDPELAVSAAELADEENRARELEEKNLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDRLLIVKEKFRGLVAVPQFKGRGAPKSDTNWQETNHGDDMRGEEWSDVDDDDDEFDNDGEDDWIDEQINNLEMADQRLLSPHALPDGRPQERW 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4751250 4752635 + Carg22640-RA Car17g00518 164890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00518 461 Coils Coil 220 240 - -
Car17g00518 461 MobiDBLite consensus disorder prediction 412 430 - -
Car17g00518 461 Pfam Plant organelle RNA recognition domain 55 383 IPR021099 GO:0003723
Car17g00518 461 MobiDBLite consensus disorder prediction 389 430 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00518 - - - cmax:111488626 889.412
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01321 Car-Chr14:11184758 Car17g00518 Car-Chr17:4751250 1.32E-68 dispersed
Car15g01271 Car-Chr15:9936600 Car17g00518 Car-Chr17:4751250 1.41E-37 dispersed
Car17g00518 Car-Chr17:4751250 Car17g01095 Car-Chr17:8492067 4.53E-49 dispersed
Car09g00491 Car-Chr9:2736684 Car17g00518 Car-Chr17:4751250 5.01E-56 transposed
Car17g00518 Car-Chr17:4751250 Car08g00105 Car-Chr8:613799 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1082 . . . . . . . . . Cmo17g00545 . . . . . . . Bhi01g02663 . . . Hepe05g1249 . . . . . . . . . . . . . . . . . Blo02g00417 . . Bda13g00292 . . Bma02g00998 . . . . . Cma17g00564 . Car17g00518 Cpe12g00478 . . . . . . . . . . . . . . . . . . .
Vvi15g515 Blo01g00137 . Bda03g00903 . . Bpe05g00915 Bma04g00799 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0341 . . . . . . . . . . . Bpe04g00848 . . . . . . . . Car17g00518 . . Bhi12g02615 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010663 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00518 Car_Chr17 FPKM 45.158047 48.31226 44.268726 44.876488 56.632687 57.158985 55.278633 43.437534 46.254372 42.625629