Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g00544 | ATGAGCAGAAGGGGGCTCAAATCCCTCCACTTTCTCACACTCTCCTTAATTTCATCCCCAATTAGATCCAACCCCATCTTCTCCTTTCACCCATTTCCGGTGTACTCCGATTCTCTCAGAGCTGCCCTCCCTAACATCACTCTATATCGCCCAACGCCTTCCTCCTCCATTGCCCACTTCTCCACTTCTCCGGACGATCTCCAAGGATTGGTTGATCCGGACGAGTCGCTTCCGTCTGAGGGTTCGCGTGCCGAATGCTTTTCGGCCCCAGAAGTCTCTTTGCTGCGTGGTTCGTTATTGGATTCTCATGCCGACTCGCCTTCTTCAGAGCCGACGCTCAAGTCTGGTAAGATTTCAAACGATGCCATTTCGATTTTAGATACAATTCGTAATAGTGATGATGGGTTCGGGGACAAAACCCAAAGATTACTTAGGCAGTTTAGGCAGAATTTGAATCCGGATTTGGTGGTTGAGATTTTGGGTCTTTTGAGAAATCCTGAATTGTGTGTCAAATTCTTTTTATGGGCTGGTCGACAAATTGGTTACAATCATACTGCGGCAGTGTACAATGCGTTGTTAGATGTTTATGAATGTGGTAGCTATGATCGAGTACCCGAGCAGTTTCTTCGAGAAATTAAGGATGATGACAAAGAGGTGCTTGGGAAGTTGCTTAATGTGTTGATTAGGAAGTGTTGTCGGAATGGGTTTTGGAATGTAGCATTGGAAGAGCTCGGGAGGCTTAAGGACTTCGGATACAAGCCTACCCGGTTAACTTATAATGCTTTAATTCAAGTCTTTCTTAGAGCAGATAAGTTGGACACTGCTTATTTGGTTCATAGAGAAATGTCAGAGTTAGGATTCAATATGGATGAGTTTACTCTTGGTCTTTTTGCTCAAGCTCTCTGCAAAGTGGGCAAATGGAGAGAGGCCCTCTCGTTAATTGAGAAAGAAGATTTTGTCCCTAATACGATTCTTTATACGAAGATGATATATGGACTGTGCAATGCTTCGTTTTTTGAAGAAGCTATGGATTTTTTGAACAGGATGAGGTCGAGTTCTTGCATCCCTAATGCTCGGACTTATAAGATCTTGCTTTGTGGCTGTTTGAATAAAGAACAGTTGGGTCGATGTAAGAGAATTCTAAGCATGATGATTGCAGAAGGCTGTTTCCCGAGTTATACGATATTTAATTCTCTTGTTCATGCTTATTGCAAATCAGGCGATTTTTCGTATGCTTATAAGTTGCTTAAGAAAATGGAAAAATGTGAATGCAAACCTGGCTATGTGGTTTACAATATCTTCATTGGCGGTATTTGTAACGGTAAAGAATTACCTGGGCCAATTACATTTGAGTTGGCTGAGAAAGCGTACAACGAGATGTGTTCTTCCGGAACTGTTCTAAATAAGGTCAATGTTGTAAGCTTTGCTCGATGCCTTTGCGGCTTTGGGAAATTCGAGGAAGCGTATAAAGTAATCCATGAAATGATGGGTAATGGTTTCATTCCTGATACATCTACATATTCTGAAGTGATAGGTTTTATGTGTAATGCCTCAAGGGTAGAAAATGCCTTTTTGCTTTTTAAAGAAATGAAAGGGGCTGGTATGGTTCCTGATGTTTATACATACACAATTTTAATTGATTGTTTTTCGAAAGCTGGCCTCATTCAACAAGCTCACAATTGGCTAGATGAAATGGTAAGGGATGGCTGTGAACCTACTGTGGTGACTTATACAACCCTCATCCATGCATATCTTAAGGCTAAGAAGGTTTCGGTCGCTAATGAACTTTTTGAGGTAATGATAGCCAAGGGTTGTATTCCTAATGTTATTACATATACAGCTTTAATTGATGGATATTGTAAATCAGGGAATATAGAAAAAGCTTGCCAGATTTATGCAAGAATGAGAGGTGATGCAGACATTCCCGATGTCGATATGTATTTTAAAACAGAAAATAACGTGTCTGAAAAGCCTAATGTTGTTACGTATGGGGCTTTGGTGGATGGTTTATGCAAGGCCCATAAAGTCAAAGATGCGTGTGACTTATTGGAAACGATGTTTACGGAAGGCTGTGAACCAAACAACATTGTATATGATGCACTTATTGATGGCTTTTGTAAGGCTGCAAAGTTAGATGAAGCACAAGAGGTGTTTGTTAAGATGGTAGAGCGTGGGTATAACCCTAATGTCTATACGTATAGCTCTCTTATCGATAGATTGTTCAAGGATAAGCGTCTAGATCTTGTATTGAAAGTGTTGTCCAAAATGTTAGAGAATTCTTGTGCTCCTAATGTTGTTATCTACACAGAGATGATTGATGGACTTTGTAAAGTGGCAAAGACAGATGAAGCTTATAAACTTATGTTGATGATGGAAGAGAAGGGATGTAAACCAAATGTTGTGACCTACACTGCAATGATTGATGGCTTTGGGAAAGCTGGTAAAGTTGACAAATGCCTCGAGCTTTTCAGGGAAATGGGCTCGAAAGGCTGTTCTCCGAATTTTGTCACCTACACGGTGTTGATCAACCATTGCTGTGCTTCAGGCCGTTTAGATGAGGCCTATGCACTTTTGGATGAAATGAAACAAACATACTGGCCAAAACATGTATCGAGCTACTGTAAGGTTGTTGAAGGCTATAACCGGGAGTTCATTCTCTCTCTCGGGCTTTTAGAGGAAGTGGAAAAGAATGATGCTACCCCAATTATTCTGCTGTACAGGGTTTTGATTGATAACTTTGTTAAGGCAGGAAGACTGGAATTGGCACTGGAGCTCCACAAAGAGGTTATATCAGCTTCAATGTCTATGGCTGCTAAGAAAAATATGTACACAACTTTGATTTACAGCTTTTCTAAGGCAATGAAGATTGATCAGGCGTTCGAGTTATATAATGATATGATAAGACAGGGTGTTATTCCAGATCTTGGTACATTTGTCGACCTTATTATGGGGCTCGTCAAAGTTAGAAGGTGGGAAGAAGCACTCCAGTTGTCAGATAGCATATGTCAAATGGTTGTGATTCAAAGGGCCATTCTGAAAGAAAATCTGGAGGAGGCAAAATAG | 3063 | 40.78 | MSRRGLKSLHFLTLSLISSPIRSNPIFSFHPFPVYSDSLRAALPNITLYRPTPSSSIAHFSTSPDDLQGLVDPDESLPSEGSRAECFSAPEVSLLRGSLLDSHADSPSSEPTLKSGKISNDAISILDTIRNSDDGFGDKTQRLLRQFRQNLNPDLVVEILGLLRNPELCVKFFLWAGRQIGYNHTAAVYNALLDVYECGSYDRVPEQFLREIKDDDKEVLGKLLNVLIRKCCRNGFWNVALEELGRLKDFGYKPTRLTYNALIQVFLRADKLDTAYLVHREMSELGFNMDEFTLGLFAQALCKVGKWREALSLIEKEDFVPNTILYTKMIYGLCNASFFEEAMDFLNRMRSSSCIPNARTYKILLCGCLNKEQLGRCKRILSMMIAEGCFPSYTIFNSLVHAYCKSGDFSYAYKLLKKMEKCECKPGYVVYNIFIGGICNGKELPGPITFELAEKAYNEMCSSGTVLNKVNVVSFARCLCGFGKFEEAYKVIHEMMGNGFIPDTSTYSEVIGFMCNASRVENAFLLFKEMKGAGMVPDVYTYTILIDCFSKAGLIQQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFEVMIAKGCIPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKTENNVSEKPNVVTYGALVDGLCKAHKVKDACDLLETMFTEGCEPNNIVYDALIDGFCKAAKLDEAQEVFVKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNVVIYTEMIDGLCKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCSPNFVTYTVLINHCCASGRLDEAYALLDEMKQTYWPKHVSSYCKVVEGYNREFILSLGLLEEVEKNDATPIILLYRVLIDNFVKAGRLELALELHKEVISASMSMAAKKNMYTTLIYSFSKAMKIDQAFELYNDMIRQGVIPDLGTFVDLIMGLVKVRRWEEALQLSDSICQMVVIQRAILKENLEEAK | 1020 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 5056961 | 5061340 | + | Carg22614-RA | Car17g00544 | 164916 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g00544 | 1020 | Pfam | PPR repeat family | 798 | 846 | IPR002885 | - | |
| Car17g00544 | 1020 | Pfam | PPR repeat family | 506 | 551 | IPR002885 | - | |
| Car17g00544 | 1020 | Pfam | PPR repeat family | 393 | 440 | IPR002885 | - | |
| Car17g00544 | 1020 | Pfam | PPR repeat family | 942 | 987 | IPR002885 | - | |
| Car17g00544 | 1020 | Pfam | PPR repeat family | 572 | 621 | IPR002885 | - | |
| Car17g00544 | 1020 | Pfam | PPR repeat family | 658 | 707 | IPR002885 | - | |
| Car17g00544 | 1020 | Pfam | PPR repeat family | 321 | 368 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 729 | 763 | IPR002885 | - | |
| Car17g00544 | 1020 | Pfam | Pentatricopeptide repeat domain | 717 | 772 | IPR002885 | - | |
| Car17g00544 | 1020 | Pfam | Pentatricopeptide repeat domain | 209 | 266 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 392 | 426 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 538 | 572 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 357 | 391 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 799 | 833 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 322 | 356 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 608 | 642 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 255 | 289 | IPR002885 | - | |
| Car17g00544 | 1020 | Pfam | PPR repeat | 906 | 931 | IPR002885 | - | |
| Car17g00544 | 1020 | Pfam | PPR repeat | 477 | 500 | IPR002885 | - | |
| Car17g00544 | 1020 | Pfam | PPR repeat | 299 | 316 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 659 | 693 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 834 | 868 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 503 | 537 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 764 | 798 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 939 | 973 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 468 | 502 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 573 | 607 | IPR002885 | - | |
| Car17g00544 | 1020 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 694 | 728 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g00544 | - | - | - | mcha:111018584 | 1739.55 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car15g00075 | Car-Chr15:462408 | Car17g00544 | Car-Chr17:5056961 | 3.92E-10 | dispersed | |
| Car17g00544 | Car-Chr17:5056961 | Car11g01457 | Car-Chr11:11803077 | 3.84E-50 | dispersed | |
| Car19g00642 | Car-Chr19:7755588 | Car17g00544 | Car-Chr17:5056961 | 4.14E-06 | dispersed | |
| Car17g00544 | Car-Chr17:5056961 | Car04g00262 | Car-Chr4:1478254 | 5.77E-21 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g1146 | . | . | . | . | . | . | . | . | . | Cmo17g00570 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla08g00440 | Cam08g0873 | Cec08g0452 | Cco08g0574 | Clacu08g0589 | . | Cre08g0412 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cma17g00588 | . | Car17g00544 | Cpe12g00501 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009746 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 32 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Car17g00544 | Car_Chr17 | FPKM | 3.535052 | 3.838525 | 3.408538 | 3.275957 | 6.849978 | 6.366031 | 6.686501 | 3.277599 | 2.901475 | 3.181198 |