Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00545 GCTTATGCCCCTCCACTTGGCTACCTATTATTACATCCGGATAACAGAAGTACTGAGGATCCTAATGAAACAAATGAAAATGAGCAATTGAAAAGCCCCAATAATTTTGGAGATGGTCGCCCAAAGGCCTCAAAAGCGCCAGCTCCTGTTGTAGATGGAACAGAAAAGGCAGCACCAACAATTGAAGTGCCTGCACTCTCCCCGGATGAACTGAAAGAAAAAACTGATAATTTTGGGTCCAAAGCATTGATTGGAGAAGGTTCTTATGGTAGAGTTTACTATGCGACCTTGACTAATGGGAAAAATGTGGCTGTAAAAAAGCTCGATGTTTCGTCTGAGCCTGACAGTAACGTTGAGTTTTTGACTCAGGTTTCTACAGTATCAAAATTGAAACATGAAAATCTCGTGGAATTGCTTGGATATTGTGTTGAAGGAAATCTTCGTGTATTGGCATATGAATATGCAACCATGGGATCTTTGCATGATGTGTTACATGGAAGGAAGGGAGTACAAGGAGCACAACCTGGTCCAGTGCTCGACTGGGTGCAGCGAGTGAGAATTGCAGTTGATGCGGCCAAAGGGCTAGAATATTTGCATGAGAAGGTCCAACCGGCTATTATACACCGGGATATCAGGTCCAGCAATGTGCTTCTTTTCGAGGATTTTAAAGCTAAGGTAGCTGATTTTAACCTCTCCAATCAAGCCCCTGATATGGCAGCCCGTCTTCATTCAACTCGAGTTTTGGGAACTTTTGGATACCATGCTCCTGAATATGCAATGACTGGACAGCTAACACAAAAGAGCGATGTATACAGCTTTGGCGTAGTTCTACTTGAGCTTTTGACTGGTAGGAAACCTGTTGATCACACGATGCCCCGTGGACAACAAAGTTTAGTCACCTGGGCTACTCCGAGGCTAAGCGAGGACAAAGTGAAGCAATGTGTAGATCCAAGACTAAAGGGAGAATACCCTCCTAAAGGAGTTGCAAAGTTAGCAGCTGTAGCTGCATTGTGTGTGCAGTATGAATCCGAATTTCGACCAAATATGAGCATCGTCGTGAAAGCCCTCCAGCCACTTTTGAAACCCCCTGCACCTACCGGTCCACCTGCTCCAGAGTCTTGA 1122 44.83 AYAPPLGYLLLHPDNRSTEDPNETNENEQLKSPNNFGDGRPKASKAPAPVVDGTEKAAPTIEVPALSPDELKEKTDNFGSKALIGEGSYGRVYYATLTNGKNVAVKKLDVSSEPDSNVEFLTQVSTVSKLKHENLVELLGYCVEGNLRVLAYEYATMGSLHDVLHGRKGVQGAQPGPVLDWVQRVRIAVDAAKGLEYLHEKVQPAIIHRDIRSSNVLLFEDFKAKVADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPRLKGEYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLKPPAPTGPPAPES 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5071048 5074513 + Carg22613-RA Car17g00545 164917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00545 373 MobiDBLite consensus disorder prediction 1 67 - -
Car17g00545 373 ProSiteProfiles Protein kinase domain profile. 78 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00545 373 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Car17g00545 373 ProSitePatterns Tyrosine protein kinases specific active-site signature. 206 218 IPR008266 GO:0004672|GO:0006468
Car17g00545 373 Pfam Protein tyrosine and serine/threonine kinase 83 356 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01390 Car-Chr6:9994531 Car17g00545 Car-Chr17:5071048 0 dispersed
Car14g01325 Car-Chr14:11207128 Car17g00545 Car-Chr17:5071048 0 dispersed
Car17g00545 Car-Chr17:5071048 Car14g00853 Car-Chr14:5024085 4.20E-90 dispersed
Car17g00948 Car-Chr17:7725705 Car17g00545 Car-Chr17:5071048 2.19E-60 dispersed
Car17g00545 Car-Chr17:5071048 Car08g00069 Car-Chr8:404266 2.11E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89475 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00545 K13436 - csv:101221382 595.89