Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00546 ATGAAGAACGGAATGATAGAATGCTGTGTTTGTCACTCCCCGTTGGTTTCTCCGACTAGCAAAGGTATATCGAGGGCATATGATCAACATAAGATCAGAATATCATCTAAGCAACGAGCCTTAAACACCCTCTTGGTTGTAGGTGATTGTATCTTGGTTGGTATGCAGCCTATTTTGGTTTATATGTCCAAGGTGGATGGGAAATTCATGTTCAGTCCAATTAGTGTTAACTTTTTGACCGAGACTACAAAGGTTATCTTTGCTATTTTTATGCTGATAATCCAGGCTAGACATCAGAAAGTTGGGGAAAAGCCTCTTCTCTCAATATCAACATTTATGCAGGCAGCACGTAACAATGTGCTTCTCGCTGTGCCAGCACTTCTCTATGCAATCAATAATTACCTGAAGTTTATCATGCAGCTATCTTTCAACCCTGCAACTGTGAAGATGCTTAGCAATTTAAAGGTTTTGGTGATTGCTGTCTTGCTAAAGTTGATTATGAGACGACATTTTTCTATTATTCAGTGGGAAGCACTTGCTCTGCTGCTTATTGGCATAAGTGTAAATCAGTTGCGGTCCATGCCTGATACCTCCACTTTGGGTCTCACAGTTACCATGAGCACATATGTCTACACACTGATTTTTGTAACTGTTCCATCTCTAGCTTCTGTTTATAACGAATATGCTTTGAAGAGCCAGTATGATACTAGCATCTATCTTCAGAATTTGTTTTTATATGGATATGGCGCGATATTCAACTTCATGGGAATATTAGGAACAGTTCTTATGAAAGGTCCTAGCAGCTTTGATATACTCCAAGGTCATTCTAAAGCCACAATGCTGCTTATAGCTAATAATGCAGCACAAGGAATTCTATCCTCTTTCTTCTTCAAATATGCAGATACAATTCTGAAGAAGTACTCCTCAACAGTTGCTACCATATTTACAGGCATAGCGTCGGCCATCTTGTTTGGTCATCAGTTGACTATGAACTTTGTCTTGGGAATATCTATAGTGTTCATCTCTATGCACCAGTTCTTCTCACCCCTCTCAAAAGTCAAAGACGAGCAGAATGGGGTTACTGAAATGGTGGATGTGGATAACCAGAGGTCAAAGGGTTCCTTCGTAAATATGGCAGCAGGAGCAAATGAAGAGGCTAGTCATCTTGTTGGATCTGATGAGAGAGAGCCACTTCTTCCAACCTAA 1206 40.22 MKNGMIECCVCHSPLVSPTSKGISRAYDQHKIRISSKQRALNTLLVVGDCILVGMQPILVYMSKVDGKFMFSPISVNFLTETTKVIFAIFMLIIQARHQKVGEKPLLSISTFMQAARNNVLLAVPALLYAINNYLKFIMQLSFNPATVKMLSNLKVLVIAVLLKLIMRRHFSIIQWEALALLLIGISVNQLRSMPDTSTLGLTVTMSTYVYTLIFVTVPSLASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFMGILGTVLMKGPSSFDILQGHSKATMLLIANNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAILFGHQLTMNFVLGISIVFISMHQFFSPLSKVKDEQNGVTEMVDVDNQRSKGSFVNMAAGANEEASHLVGSDEREPLLPT 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5083038 5095171 - Carg22612-RA Car17g00546 164918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00546 401 Pfam Nucleotide-sugar transporter 59 343 IPR007271 GO:0000139|GO:0015165|GO:0016021|GO:0090481
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00546 - - - csv:101221623 710.294
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g00068 Car17g00546 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00183 Car-Chr2:1097431 Car17g00546 Car-Chr17:5083038 6.06E-37 transposed
Car08g00090 Car-Chr8:532468 Car17g00546 Car-Chr17:5083038 1.09E-12 transposed
Car17g00546 Car-Chr17:5083038 Car08g00068 Car-Chr8:393761 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1154 Blo01g00234 . . Bda08g00117 . . . . Cmo08g00084 Cmo17g00573 . . . . . . . . . . . . . . Cla08g00447 Cam08g0877 Cec08g0458 Cco08g0579 Clacu08g0595 . Cre08g0417 . . . . . . . . . . . . Bpe05g01020 . . . . . . . Cma17g00591 Car08g00068 Car17g00546 Cpe12g00503 Cpe17g00993 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002816 2 2 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 7 6 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00546 Car_Chr17 FPKM 8.830368 11.426453 6.60532 7.17676 6.776217 5.843748 5.668906 11.27099 11.572738 12.307577