Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00548 ATGGGATCGTGCCTCTCTGGGGACCGCAATAATCACGCGATCCCTTATTCTGAGATCGCTTCCACTTCTCGTGGTGATGGCGTTGTTACCAGAAGCAACTCCAATAGGAAGATTACGAAAAAGAGTTCTTCTCCCTCTATTGACTCTCCAAGGGAGATGTCGCTTCATCGAGTTCCTGGCCGGATGTTTTTGAATGGATCAACTGATCATGCCTCGCTCTTTACTAGGCAAGGCAAGAAAGGCATCAATCAGGACGCTATGATTGTTTGGGAGAATTTTGGTTCAAAAGCAGATACAATATTTTGCGGAGTCTTTGATGGACATGGTCCTTTCGGCCATATGGTTGCAAAGAAAGTCAGAGACTCTCTTCCTCTAAAACTGAGTGCACAATGGGAATTGGGATGTCAAGTCTCTCCACCAGTGCTGGTTAACAAGGATTCTGGAACCTCTCGTTGCGATCCTGGTCGTCTGGGCAGTTCCAATGACATTCATGTCATGTTGAAAGAGTCTTTTCTGAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACATCCATATATCGATTGCTATACCAGTGGTACAACATCAGTTGCTTTGATCAAACAGGGTCGGGATCTTATCATCGGAAATGTCGGGGACTCGAGGGCTGTTTTAGGTACCAGAGATCAATCGAACTCCCTCATTGCAGTTCAGTTGACTGTGGACCTCAAGCCAAATCTTCCAAGAGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTCGAAATGAACCCGAGACTTTTCGGGTTTGGCTTCCCGACAGTGATTCTCCTGGCCTTGCTATGGCCAGAGCCTTCGGAGATTTCTGTTTGAAAGACTTTGGCTTGATAGCCGTCCCTGATATTTCTTGTCATCATCTTAATGAGAAAGATGAGTTTGTTGTACTGGCTACCGATGGGGTTTGGGATGTACTTTCAAACGAAGAGGTTGTGGCAATTGTTGCATCTTCTCCAAGATCCTCTGCAGCTCGTATCGTTGTGGACACGGCTTCTCGAGCATGGAGATCGAAGTACCCTACTGCCAAAGTGGATGATTGTGCCGTAGTCTGCTTGTACCTGGACTCTAGTGAGAGTGCTACAGTGACAACTAAGGAGCAGCAGGAGCTCACCAAAGACATGGAAACTTAG 1179 46.23 MGSCLSGDRNNHAIPYSEIASTSRGDGVVTRSNSNRKITKKSSSPSIDSPREMSLHRVPGRMFLNGSTDHASLFTRQGKKGINQDAMIVWENFGSKADTIFCGVFDGHGPFGHMVAKKVRDSLPLKLSAQWELGCQVSPPVLVNKDSGTSRCDPGRLGSSNDIHVMLKESFLKAFKVMDKELKLHPYIDCYTSGTTSVALIKQGRDLIIGNVGDSRAVLGTRDQSNSLIAVQLTVDLKPNLPREAERIRLCKGRIFALRNEPETFRVWLPDSDSPGLAMARAFGDFCLKDFGLIAVPDISCHHLNEKDEFVVLATDGVWDVLSNEEVVAIVASSPRSSAARIVVDTASRAWRSKYPTAKVDDCAVVCLYLDSSESATVTTKEQQELTKDMET 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5108119 5111902 - Carg22610-RA Car17g00548 164920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00548 392 MobiDBLite consensus disorder prediction 16 53 - -
Car17g00548 392 ProSiteProfiles PPM-type phosphatase domain profile. 70 370 IPR001932 -
Car17g00548 392 SUPERFAMILY PP2C-like 69 371 IPR036457 -
Car17g00548 392 SMART PP2C_4 59 368 IPR001932 -
Car17g00548 392 Pfam Protein phosphatase 2C 84 337 IPR001932 -
Car17g00548 392 MobiDBLite consensus disorder prediction 16 50 - -
Car17g00548 392 Gene3D - 65 372 IPR036457 -
Car17g00548 392 PANTHER ALPHABET, ISOFORM E-RELATED 1 379 - -
Car17g00548 392 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 379 - -
Car17g00548 392 CDD PP2Cc 70 370 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00965 Car-Chr16:8036771 Car17g00548 Car-Chr17:5108119 1.03E-144 dispersed
Car17g00548 Car-Chr17:5108119 Car20g00496 Car-Chr20:2748724 1.98E-134 dispersed
Car17g00548 Car-Chr17:5108119 Car08g00065 Car-Chr8:384030 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00548 - - csv:101222320 664.84