Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00550 AACCAAAACCAAAACCAAAACCAAAACCCCACTCTGATTCTCTCTCTCATCCTCATTTCCCCCCGTTCTCTCTCTCCTTTACCGAACCCCCTTGAATTCCCATTCCCTAAATCGCTTCTCCCACATCCCAATTTTGACGATTTTCCTCCTTCCGCCATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAAATGGACATGGGTATGGGATATTACAGCGATGACGACGATCCTGACGCTGAAGATTTCGTGGACGACGAAACCGATGATTACTTCGACTCACGTCGACGCGAGCAAAATTATACCATACTAAATGAGTCAGATATAAGACAACGCCAAGAGGATGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCATCAATTGTGTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGATGAATGGTTTGCCGATGAAACTCGAGTAAGGAAGCAAGTTGGCTTATTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTCGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCAACTGCTGGGAAGGCTACATTACCACATCAATTAATGACGGTCCTGGATGTCTGGCGTTGAGATGTCCTGATCCTTCTTGCAGTGCTGTGGTTGATCAAGACATGATTAACTCATTGGTCTCGGATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAGGACAACAAAAAGACTAAATGGTGCCCCGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCCGGCAATGGAAATTATGATGTTTCTTGCCTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCAACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAATTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCGTGTACATTTGAATTTTGCTGGCTGTGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGACGAGGCTGAGAAAAGAAGAGAAATGGCAAAGAATTCTTTGGAAAGATACACTCACTATTACGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATCGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATTCATATGGATATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAATTGCTCCAGTTCGTCAGTGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTAGTTAGAGCATTAGAGAACGGGCTTTCGGATGTGAATTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAACACAGCAGGAAGTAGTAAAGGAGGGAGAAGCGTACGAGGTAAGGGAATCAGTCGAATCGGGAGCTCAACC 1833 44.35 NQNQNQNQNPTLILSLILISPRSLSPLPNPLEFPFPKSLLPHPNFDDFPPSAMDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYSDDDDPDAEDFVDDETDDYFDSRRREQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCANCWEGYITTSINDGPGCLALRCPDPSCSAVVDQDMINSLVSDEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCLCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCTFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYSYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFVSAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKNTAGSSKGGRSVRGKGISRIGSST 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5131842 5138858 + Carg22608-RA Car17g00550 164922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00550 611 Coils Coil 409 429 - -
Car17g00550 611 ProSiteProfiles Zinc finger RING-type profile. 192 238 IPR001841 -
Car17g00550 611 ProSiteProfiles TRIAD supradomain profile. 188 401 IPR044066 -
Car17g00550 611 Pfam Ariadne domain 410 571 IPR045840 -
Car17g00550 611 MobiDBLite consensus disorder prediction 575 611 - -
Car17g00550 611 MobiDBLite consensus disorder prediction 575 595 - -
Car17g00550 611 Pfam IBR domain, a half RING-finger domain 340 388 IPR002867 -
Car17g00550 611 Pfam IBR domain, a half RING-finger domain 261 323 IPR002867 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00550 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101223037 1040.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g00187 Car17g00550 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00278 Car-Chr2:1881519 Car17g00550 Car-Chr17:5131842 3.46E-60 dispersed
Car17g00550 Car-Chr17:5131842 Car20g00750 Car-Chr20:4397091 1.92E-62 dispersed
Car12g00952 Car-Chr12:9609823 Car17g00550 Car-Chr17:5131842 0 transposed
Car19g00179 Car-Chr19:1653382 Car17g00550 Car-Chr17:5131842 1.97E-16 transposed
Car17g00550 Car-Chr17:5131842 Car08g00187 Car-Chr8:1172637 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1195 Blo01g00201 . . Bda08g00149 . . . . Cmo08g00213 Cmo17g00577 . . . . . . . . . . . . . . Cla08g00460 Cam08g0887 Cec08g0471 Cco08g0586 Clacu08g0604 . Cre08g0424 Cone14ag0574 . . . . . . . . . . . Bpe05g00982 . . . . . . . Cma17g00596 Car08g00187 Car17g00550 Cpe12g00507 Cpe17g01099 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00278 . 164 590 ARIADNE family AT4G34370 71.3 2.3e-182 635.6
Car20g00750 . 164 593 ARIADNE family AT4G34370 71.2 2.8e-180 628.6
Car02g00278 . 58 527 ARIADNE family AT2G16090 78.4 1.6e-224 775.8
Car20g00750 . 58 544 ARIADNE family AT2G16090 76.7 2.4e-223 771.9
Car20g00750 . 33 543 ARIADNE family AT3G27710 61.6 2.4e-184 642.5
Car02g00278 . 36 522 ARIADNE family AT3G27710 62.4 5.9e-183 637.9
Car02g00278 . 47 522 ARIADNE family AT3G27720 54.4 6.4e-144 508.1
Car20g00750 . 44 522 ARIADNE family AT3G27720 53.6 6.0e-142 501.5
Car17g00550 CST 113 587 ARIADNE family AT1G05890 72.8 6.9e-217 750.7
Car08g00187 CST 56 524 ARIADNE family AT1G05890 73.6 9.0e-217 750.4
Car12g00952 . 69 450 ARIADNE family AT1G05890 63.4 2.8e-162 569.3
Car08g00187 CST 16 584 ARIADNE family AT1G65430 69.6 8.2e-244 840.1
Car17g00550 CST 68 594 ARIADNE family AT1G65430 72.8 2.0e-237 818.9
Car12g00952 . 69 455 ARIADNE family AT1G65430 76.6 4.3e-184 641.7
Car08g00187 CST 53 449 ARIADNE family AT2G31780 57.6 5.8e-144 508.1
Car17g00550 CST 110 506 ARIADNE family AT2G31780 58.4 7.5e-144 507.7
Car12g00952 . 67 453 ARIADNE family AT2G31780 53.6 1.9e-126 449.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00550 Car_Chr17 FPKM 8.441452 9.686826 7.350856 8.895391 9.694057 11.253538 10.204868 8.259852 9.367704 8.328552