Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00550 AACCAAAACCAAAACCAAAACCAAAACCCCACTCTGATTCTCTCTCTCATCCTCATTTCCCCCCGTTCTCTCTCTCCTTTACCGAACCCCCTTGAATTCCCATTCCCTAAATCGCTTCTCCCACATCCCAATTTTGACGATTTTCCTCCTTCCGCCATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAAATGGACATGGGTATGGGATATTACAGCGATGACGACGATCCTGACGCTGAAGATTTCGTGGACGACGAAACCGATGATTACTTCGACTCACGTCGACGCGAGCAAAATTATACCATACTAAATGAGTCAGATATAAGACAACGCCAAGAGGATGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCATCAATTGTGTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGATGAATGGTTTGCCGATGAAACTCGAGTAAGGAAGCAAGTTGGCTTATTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTCGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCAACTGCTGGGAAGGCTACATTACCACATCAATTAATGACGGTCCTGGATGTCTGGCGTTGAGATGTCCTGATCCTTCTTGCAGTGCTGTGGTTGATCAAGACATGATTAACTCATTGGTCTCGGATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAGGACAACAAAAAGACTAAATGGTGCCCCGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCCGGCAATGGAAATTATGATGTTTCTTGCCTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCAACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAATTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCGTGTACATTTGAATTTTGCTGGCTGTGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGACGAGGCTGAGAAAAGAAGAGAAATGGCAAAGAATTCTTTGGAAAGATACACTCACTATTACGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATCGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATTCATATGGATATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAATTGCTCCAGTTCGTCAGTGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTAGTTAGAGCATTAGAGAACGGGCTTTCGGATGTGAATTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAACACAGCAGGAAGTAGTAAAGGAGGGAGAAGCGTACGAGGTAAGGGAATCAGTCGAATCGGGAGCTCAACC 1833 44.35 NQNQNQNQNPTLILSLILISPRSLSPLPNPLEFPFPKSLLPHPNFDDFPPSAMDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYSDDDDPDAEDFVDDETDDYFDSRRREQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCANCWEGYITTSINDGPGCLALRCPDPSCSAVVDQDMINSLVSDEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCLCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCTFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYSYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFVSAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKNTAGSSKGGRSVRGKGISRIGSST 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5131842 5138858 + Carg22608-RA Car17g00550 164922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00550 611 Coils Coil 409 429 - -
Car17g00550 611 ProSiteProfiles Zinc finger RING-type profile. 192 238 IPR001841 -
Car17g00550 611 ProSiteProfiles TRIAD supradomain profile. 188 401 IPR044066 -
Car17g00550 611 Pfam Ariadne domain 410 571 IPR045840 -
Car17g00550 611 MobiDBLite consensus disorder prediction 575 611 - -
Car17g00550 611 MobiDBLite consensus disorder prediction 575 595 - -
Car17g00550 611 Pfam IBR domain, a half RING-finger domain 340 388 IPR002867 -
Car17g00550 611 Pfam IBR domain, a half RING-finger domain 261 323 IPR002867 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00187 Car17g00550 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00278 Car-Chr2:1881519 Car17g00550 Car-Chr17:5131842 3.46E-60 dispersed
Car17g00550 Car-Chr17:5131842 Car20g00750 Car-Chr20:4397091 1.92E-62 dispersed
Car12g00952 Car-Chr12:9609823 Car17g00550 Car-Chr17:5131842 0 transposed
Car19g00179 Car-Chr19:1653382 Car17g00550 Car-Chr17:5131842 1.97E-16 transposed
Car17g00550 Car-Chr17:5131842 Car08g00187 Car-Chr8:1172637 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00550 K11968 - csv:101223037 1040.41