Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00551 ATGACTGTAGCAGCAGGGATCGGCTACACCTTGATAGCGTTGGGCCCTTCTCTCTCCCTTTTCATCTCCGTCATTGCTCACAAGCCTTTCTTGATTCTCACTCTCCTCTCCAGCACCCTGTTATGGCTCATTAGTTTGATACTGCTGTCTGCGTTATGGAGGGGCTTTCTTCCACTGAACTCAACAATATTGTGGCCTTATGCAACTCTTATATTGACATCAGTCATTTTTCAAGAAGCTCTACGGGTTCTTTTCTGGAAAGTCTACAGGAAATTAGAAGACATGTTAGATGCTTTCGCTGACAGAGTTTCAAAGCCGCGTCTATATTTGACAGATAAGATGCAGATTGCTCTAGCTGGGGGCTTAGGTCATGGTGTAGCTCATGCCGTGTTTTTCTGTCTTAGCCTTCTAACACCATCATTTGGTCCAGCCACTTACTTTGTTGATCGGTGCTCCCAGCTACCATTTTTTCTCGTCTCTGCTATCATTGCTCTTGCATTTGTCACTATCCATACTTTCTCTATGGTCATTGCATTCAATGGATATTCAGAGGGGAAGAAAGTGGACCAGTATTTTGTTCCAGTCATCCATCTTGCCGCAGGAATGGTGACGCTGGTAAACTTTGCATCTGGAGGTTGTGTAATTGGTATCCCTCTGCTATATATAATGGCAAGTCTAACCTTGATTCACAGTGGGAAAATGGTTTGGAGAAGATTGATGGAAAGCCGAAGTAGCCAAGGTAGTCGGTAA 750 44.27 MTVAAGIGYTLIALGPSLSLFISVIAHKPFLILTLLSSTLLWLISLILLSALWRGFLPLNSTILWPYATLILTSVIFQEALRVLFWKVYRKLEDMLDAFADRVSKPRLYLTDKMQIALAGGLGHGVAHAVFFCLSLLTPSFGPATYFVDRCSQLPFFLVSAIIALAFVTIHTFSMVIAFNGYSEGKKVDQYFVPVIHLAAGMVTLVNFASGGCVIGIPLLYIMASLTLIHSGKMVWRRLMESRSSQGSR 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5139462 5147274 - Carg22607-RA Car17g00551 164923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00551 249 Pfam Aph-1 protein 2 238 IPR009294 GO:0016021|GO:0016485|GO:0043085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00551 K06172 APH1; gamma-secretase subunit APH-1 - csv:101202764 427.943
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1199 . . . . . Bpe14g01038 . . . Cmo17g00578 . . . . . . . . . . . . . . Cla08g00464 Cam08g0888 Cec08g0472 Cco08g0587 Clacu08g0607 . Cre08g0428 . . . Cone11ag0616 . . . . . . . . . . Bma02g00989 . . . . . Cma17g00597 . Car17g00551 Cpe12g00508 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009200 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 5 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00551 Car_Chr17 FPKM 0.0 0.0 21.692844 22.436974 258.959778 250.948685 256.68396 1.754345 1.523124 1.103454