Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00563 AACCATCTTCCGACCATTTCTATCTCCAAATCTCTGCCTTCTTCTTCTTCTTCTTCTTCCTCCAGCCCTTCTTCTTCTTCTGCATCTGCTCGCGACGCCAAAATGACCGTAATCGATGTCATCTTCCGAGTCGATTCCATTTGCAAGAAATACGAGAAGTATGATGTCGAGAAACAGCGCGAGCTCAATGCTTATGGTGATGATGTTTTTGCTCGCCTCTACGCCGCCGTCGAACTCGAAATCGAAGCCGCTCTCCAGAAATATGAGAGTGCCTGTACGGAGAAGAATAGGGCTGCTGCAGTTGCGATGAACGCTGAGGTTCGGCGGAAGAAGGCCCGATTGATGGATGAAGTTCCCAAGCTTCATAAATTGGCTCGCAAGAAGATTAAAGGGGTTCCGAAAGAAGAGCTTGAGGTCAGAGGTGATCTTGTTCTTGCGCTTGAAGAGAGGATTAAAGCGATTCCAGATGGGAGTACGACAGGCAAACCATCTGGAGGATGGGCCTCCACCTCATCTAACAATATTAAGTTTGATTCAACAACAGATGGACACTTCGAGAGCGAGTATTTCCAACAAAGCGAAGAATCGAGTCAATTTCGACAGGAGTATGATATGCGGAAGATGAAACAGGACGAAGGTCTGGATGTCATATCTGAAGGGTTGGATATGCTGAAAAATCTAGCCCATGATATGAATGAGGAATTGGATAGGCAAGTTCCATTAATTGACGAGATTGACTCAAAGGTAGACAAGGTGACTAATGAGATGAAAAACACCAATGTTAGGCTCAAGCAAACGCTGAATGAGGTGAGATCCAGCCAAAACTTCTGCATCGATATCATTCTTCTCTGTATAATTCTTGGAATCGCTTCTTACTTGTACAATATATTGAGCGGAAATGGTTGA 906 44.7 NHLPTISISKSLPSSSSSSSSSPSSSSASARDAKMTVIDVIFRVDSICKKYEKYDVEKQRELNAYGDDVFARLYAAVELEIEAALQKYESACTEKNRAAAVAMNAEVRRKKARLMDEVPKLHKLARKKIKGVPKEELEVRGDLVLALEERIKAIPDGSTTGKPSGGWASTSSNNIKFDSTTDGHFESEYFQQSEESSQFRQEYDMRKMKQDEGLDVISEGLDMLKNLAHDMNEELDRQVPLIDEIDSKVDKVTNEMKNTNVRLKQTLNEVRSSQNFCIDIILLCIILGIASYLYNILSGNG 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5227173 5229419 - Carg22595-RA Car17g00563 164935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00563 301 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car17g00563 301 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Car17g00563 301 MobiDBLite consensus disorder prediction 155 175 - -
Car17g00563 301 Pfam SNARE domain 241 290 IPR000727 -
Car17g00563 301 Coils Coil 242 269 - -
Car17g00563 301 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00929 Car-Chr1:8979636 Car17g00563 Car-Chr17:5227173 4.67E-123 dispersed
Car14g00181 Car-Chr14:848935 Car17g00563 Car-Chr17:5227173 1.88E-119 dispersed
Car17g00563 Car-Chr17:5227173 Car20g00420 Car-Chr20:2360490 1.50E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00563 K08506 - csv:101211289 427.943