Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00565 ATGGCCGGAGGTGGCGCCGGAAGGTCCTTGGAAGAGACGGCCACATGGGCCGTCGCCGCCGTCTGCTTCGTCTTGGTCTTGATTTCCATTGTCATCGAACATAGCCTGCATCTCATCGGAAAGTGGTTTAAGAAGAAGCACAAACGAGCTCTTTACGAAGCCCTTGAGAAGATCAAAGCAGAGCTGATGCTATTGGGGTTCATATCGCTGCTGCTGACGGTAGGACAAAGCCTAATCACCAATGTTTGTATACCGGAAGACGTGGCGGCCACGTGGCATCCATGTAGTCCCCAAAAGGAGGAGGAATTAAGTAAACAAGATGACGTGGTGAACTCCGACACTAATCGCCGGAAACTTCTCGCCGTCTCCCCTGTCAATGCCACTTTCCGGCGCGTCCTCGCTGGGGGCGGCGGAACCGACAAATGTGCTGCCAAGGGTAAGGTTCCATTTGTGTCGGAAGAAGGCATTCATCAGCTGCACATATTCATCTTCGTGTTGGCTGTCTTCCATGTTCTGTACTGTGTTTTAACTTTGGCTTTAGGAAAAAAAAAGATGAGAAGTTGGAAGGCATGGGAAAAGGAAACAAGAACCGTGGAGTACCAATTTTCACACGATCCAGAGCGGTTCCGATTTGCAAGAGACACATCATTCGGAAGAAGACATTTGAGTTTTTGGACCAAATCTCCTTCTCTAGTATGGATGGTTTGTTTCTTCAGACAATTTGTTCGGTCGGTTCCTAAAGTTGATTACCTGACCTTAAGACATGGTTTCGTGATGGCTCATCTGGCACCACATAGCGATCAGAAATTCGACTTCCAAAAATACATCAAACGATCCCTGGAAGAAGATTTCAAGGTGGTCGTTAGTATCAGCCCTCCAATCTGGTTTTTGGCTGTCCTCTTCCTACTTTTCAACACCCATGGGTGGAGGGCGTACCTATGGCTTCCATTTATCCCATTAATCATTGTATTACTGGTGGGAACGAAATTGCAAGTGATAATTACGAAAATGGCAGTGAGGATTCAAGAAAGAGGCGAGGTGGTGAAGGGGGTGCCGGTGGTCGAGCCAGGGGACGAGCTTTTCTGGTTCAATCGGCCTCGCCTCATTCTTTATCTCATCAACTTCGTGCTGTTTCAGAACGCCTTTCAGCTCGCTTTCTTTGCTTGGACTTGGAAAGAATTCGGGATGAAATCGTGCTTCCATGAGCACGTAGAGGATTTGGTGATTAGAATAACGATGGGGGTTCTCGTTCAAATCCTTTGTAGTTATGTCACGTTGCCCCTTTACGCTCTCGTTACACAGATGGGTTCCACAATGAAACCAACGATTTTCAACGAAAGGGTAGCAACGGCGTTAAAAAACTGGCATCACACGGCTCGCAAACACATTAAGCAAAATCAAGGTTCCATCACGCCTATGTCTAGTCGCCCACCAACCCCGTCCCACCATATGTCGCCGATGCACCTCCTCCGCCACTACCGAACCCAGTTGGACAGTGTCCACACCTCTCCCAGACGGTCCGTTTTTGACAATGACCATTGGGACCCCGACTCAACGTCGCCGTCGCATCGCTTTCACCCTCGCGACATGGAGACCGGCGGTGATGTTGAGGTTGAGACTGACCATTCAAACCAACCCAATTCAACTCAAGTCGTGGATGTAGATGTTGAACCGATGGAGATGAATAATGATTCTGAACAGCATGAGATTAAAATGGGTTCGAATGAATTTTCGTTTGACAAAAGAAATGATAGAATATGA 1761 47.98 MAGGGAGRSLEETATWAVAAVCFVLVLISIVIEHSLHLIGKWFKKKHKRALYEALEKIKAELMLLGFISLLLTVGQSLITNVCIPEDVAATWHPCSPQKEEELSKQDDVVNSDTNRRKLLAVSPVNATFRRVLAGGGGTDKCAAKGKVPFVSEEGIHQLHIFIFVLAVFHVLYCVLTLALGKKKMRSWKAWEKETRTVEYQFSHDPERFRFARDTSFGRRHLSFWTKSPSLVWMVCFFRQFVRSVPKVDYLTLRHGFVMAHLAPHSDQKFDFQKYIKRSLEEDFKVVVSISPPIWFLAVLFLLFNTHGWRAYLWLPFIPLIIVLLVGTKLQVIITKMAVRIQERGEVVKGVPVVEPGDELFWFNRPRLILYLINFVLFQNAFQLAFFAWTWKEFGMKSCFHEHVEDLVIRITMGVLVQILCSYVTLPLYALVTQMGSTMKPTIFNERVATALKNWHHTARKHIKQNQGSITPMSSRPPTPSHHMSPMHLLRHYRTQLDSVHTSPRRSVFDNDHWDPDSTSPSHRFHPRDMETGGDVEVETDHSNQPNSTQVVDVDVEPMEMNNDSEQHEIKMGSNEFSFDKRNDRI 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5237572 5240927 - Carg22593-RA Car17g00565 164937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00565 586 MobiDBLite consensus disorder prediction 500 538 - -
Car17g00565 586 MobiDBLite consensus disorder prediction 464 481 - -
Car17g00565 586 MobiDBLite consensus disorder prediction 500 549 - -
Car17g00565 586 Pfam Mlo family 8 493 IPR004326 GO:0006952|GO:0016021
Car17g00565 586 MobiDBLite consensus disorder prediction 463 484 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00565 K08472 MLO; mlo protein - csv:101212018 982.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01028 Car-Chr1:9763379 Car17g00565 Car-Chr17:5237572 5.88E-126 dispersed
Car03g00574 Car-Chr3:5487864 Car17g00565 Car-Chr17:5237572 0 dispersed
Car04g01437 Car-Chr4:8327962 Car17g00565 Car-Chr17:5237572 0 dispersed
Car07g00331 Car-Chr7:1665869 Car17g00565 Car-Chr17:5237572 0 dispersed
Car07g00604 Car-Chr7:3053548 Car17g00565 Car-Chr17:5237572 9.86E-18 dispersed
Car08g00870 Car-Chr8:5818765 Car17g00565 Car-Chr17:5237572 6.92E-141 dispersed
Car13g00156 Car-Chr13:1378163 Car17g00565 Car-Chr17:5237572 0 dispersed
Car13g00158 Car-Chr13:1410225 Car17g00565 Car-Chr17:5237572 1.92E-116 dispersed
Car15g00303 Car-Chr15:1635960 Car17g00565 Car-Chr17:5237572 1.37E-123 dispersed
Car17g00043 Car-Chr17:207740 Car17g00565 Car-Chr17:5237572 5.37E-137 dispersed
Car17g00565 Car-Chr17:5237572 Car18g00811 Car-Chr18:9173318 0 dispersed
Car17g00565 Car-Chr17:5237572 Car20g00418 Car-Chr20:2354140 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car01g01028 CCT,CST 5 548 MLO family AT5G53760 69.9 6.8e-214 740.7
Car15g00303 . 2 553 MLO family AT5G53760 68.9 8.9e-214 740.3
Car09g00788 CCT,CST 10 325 MLO family AT5G53760 60.4 9.2e-118 421.4
Car01g00490 . 10 479 MLO family AT3G45290 53.8 5.4e-138 488.4
Car01g01028 CCT,CST 1 551 MLO family AT1G26700 67.6 2.9e-209 725.3
Car15g00303 . 3 553 MLO family AT1G26700 67.8 2.9e-209 725.3
Car09g00788 CCT,CST 1 329 MLO family AT1G26700 58.2 9.8e-117 417.9
Car18g00811 . 7 495 MLO family AT2G39200 66.8 3.3e-192 668.7
Car13g00156 CCT,ECH 8 536 MLO family AT2G39200 63.7 5.7e-192 667.9
Car20g00418 CCT,ECH 8 509 MLO family AT2G39200 67.2 3.1e-190 662.1
Car17g00565 . 8 503 MLO family AT2G39200 66.1 2.7e-186 649.0
Car04g01437 . 7 557 MLO family AT2G39200 60.9 1.1e-184 643.7
Car20g00418 CCT,ECH 8 414 MLO family AT1G61560 67.8 2.2e-161 565.8
Car17g00565 . 8 414 MLO family AT1G61560 67.6 3.2e-160 562.0
Car13g00156 CCT,ECH 8 416 MLO family AT1G61560 66.9 7.8e-159 557.4
Car18g00811 . 7 404 MLO family AT1G61560 65.2 2.6e-154 542.3
Car04g01437 . 7 440 MLO family AT1G61560 60.4 5.2e-147 518.1
Car03g00574 CST 30 427 MLO family AT1G61560 52.2 7.4e-117 417.9
Car07g00331 CST 28 424 MLO family AT1G61560 52.7 1.4e-115 413.7
Car06g00140 . 30 424 MLO family AT1G61560 50.2 8.7e-110 394.4
Car07g00331 CST 16 492 MLO family AT2G17430 62.4 1.1e-168 590.5
Car03g00574 CST 12 495 MLO family AT2G17430 60.8 3.1e-168 589.0
Car06g00140 . 30 494 MLO family AT2G17430 62.2 3.6e-156 548.9
Car17g00565 . 7 456 MLO family AT2G17430 50.4 2.0e-122 436.8
Car05g00852 . 2 412 MLO family AT2G17430 51.1 1.8e-118 423.7
Car03g00574 CST 2 572 MLO family AT2G17480 62.4 1.5e-195 679.9
Car07g00331 CST 7 569 MLO family AT2G17480 62.5 2.8e-194 675.6
Car06g00140 . 5 577 MLO family AT2G17480 58.0 9.7e-179 624.0
Car05g00852 . 12 397 MLO family AT2G17480 55.7 2.0e-131 466.8
Car13g00156 CCT,ECH 8 457 MLO family AT2G17480 52.7 4.7e-125 445.7
Car20g00418 CCT,ECH 8 461 MLO family AT2G17480 50.2 8.9e-124 441.4
Car07g00331 CST 28 388 MLO family AT1G42560 59.9 3.1e-122 435.6
Car03g00574 CST 30 391 MLO family AT1G42560 58.0 1.1e-119 427.2
Car06g00140 . 30 389 MLO family AT1G42560 56.7 3.6e-110 395.6
Car05g00852 . 12 313 MLO family AT1G42560 54.3 4.4e-100 362.1
Car08g00870 . 6 415 MLO family AT4G24250 54.5 1.2e-116 417.2
Car17g00043 . 6 435 MLO family AT4G24250 51.3 4.5e-111 398.7
Car03g00574 CST 7 392 MLO family AT5G65970 64.2 5.3e-143 505.0
Car07g00331 CST 8 389 MLO family AT5G65970 63.6 5.5e-140 495.0
Car06g00140 . 29 389 MLO family AT5G65970 65.7 2.2e-136 483.0
Car20g00418 CCT,ECH 2 379 MLO family AT5G65970 51.6 1.2e-105 380.9
Car17g00565 . 2 379 MLO family AT5G65970 50.3 1.4e-103 374.0
Car03g00574 CST 22 475 MLO family AT2G33670 59.9 7.4e-156 547.7
Car07g00331 CST 28 472 MLO family AT2G33670 61.1 9.7e-156 547.4
Car05g00852 . 2 475 MLO family AT2G33670 53.3 2.1e-142 503.1
Car06g00140 . 30 472 MLO family AT2G33670 57.0 1.7e-136 483.4
Car13g00156 CCT,ECH 6 482 MLO family AT2G33670 50.1 4.3e-127 452.2
Car18g00811 . 64 520 MLO family AT1G11310 62.8 3.2e-170 595.5
Car13g00156 CCT,ECH 63 511 MLO family AT1G11310 65.7 4.7e-166 581.6
Car20g00418 CCT,ECH 63 518 MLO family AT1G11310 62.7 1.5e-164 576.6
Car17g00565 . 63 518 MLO family AT1G11310 61.9 9.2e-162 567.4
Car04g01437 . 64 604 MLO family AT1G11310 55.4 1.2e-158 557.0
Car07g00331 CST 83 500 MLO family AT1G11310 50.1 7.0e-109 391.7
Car08g00870 . 1 498 MLO family AT2G44110 59.8 9.6e-164 573.9
Car17g00043 . 1 524 MLO family AT2G44110 57.6 6.2e-163 571.2
Car08g00870 . 1 506 MLO family AT4G02600 72.8 1.4e-213 739.6
Car17g00043 . 1 505 MLO family AT4G02600 73.5 3.2e-210 728.4
Car04g00505 CCT 4 502 MLO family AT1G11000 67.5 2.1e-194 676.0
Car16g01169 . 40 332 MLO family AT1G11000 52.6 1.4e-78 291.2
Car16g01170 . 20 179 MLO family AT1G11000 59.9 8.5e-47 185.7
Car08g00870 . 1 506 MLO family AT4G02600 72.8 1.4e-213 739.6
Car17g00043 . 1 505 MLO family AT4G02600 73.5 3.2e-210 728.4
Car18g00811 . 64 520 MLO family AT1G11310 62.8 3.2e-170 595.5
Car13g00156 CCT,ECH 63 511 MLO family AT1G11310 65.7 4.7e-166 581.6
Car20g00418 CCT,ECH 63 518 MLO family AT1G11310 62.7 1.5e-164 576.6
Car17g00565 . 63 518 MLO family AT1G11310 61.9 9.2e-162 567.4
Car04g01437 . 64 604 MLO family AT1G11310 55.4 1.2e-158 557.0
Car07g00331 CST 83 500 MLO family AT1G11310 50.1 7.0e-109 391.7
Car01g00490 . 10 479 MLO family AT3G45290 53.8 5.4e-138 488.4
Car04g00505 CCT 4 502 MLO family AT1G11000 67.5 2.1e-194 676.0
Car16g01169 . 40 332 MLO family AT1G11000 52.6 1.4e-78 291.2
Car16g01170 . 20 179 MLO family AT1G11000 59.9 8.5e-47 185.7
Car03g00574 CST 22 475 MLO family AT2G33670 59.9 7.4e-156 547.7
Car07g00331 CST 28 472 MLO family AT2G33670 61.1 9.7e-156 547.4
Car05g00852 . 2 475 MLO family AT2G33670 53.3 2.1e-142 503.1
Car06g00140 . 30 472 MLO family AT2G33670 57.0 1.7e-136 483.4
Car13g00156 CCT,ECH 6 482 MLO family AT2G33670 50.1 4.3e-127 452.2
Car20g00418 CCT,ECH 8 414 MLO family AT1G61560 67.8 2.2e-161 565.8
Car17g00565 . 8 414 MLO family AT1G61560 67.6 3.2e-160 562.0
Car13g00156 CCT,ECH 8 416 MLO family AT1G61560 66.9 7.8e-159 557.4
Car18g00811 . 7 404 MLO family AT1G61560 65.2 2.6e-154 542.3
Car04g01437 . 7 440 MLO family AT1G61560 60.4 5.2e-147 518.1
Car03g00574 CST 30 427 MLO family AT1G61560 52.2 7.4e-117 417.9
Car07g00331 CST 28 424 MLO family AT1G61560 52.7 1.4e-115 413.7
Car06g00140 . 30 424 MLO family AT1G61560 50.2 8.7e-110 394.4
Car07g00331 CST 16 492 MLO family AT2G17430 62.4 1.1e-168 590.5
Car03g00574 CST 12 495 MLO family AT2G17430 60.8 3.1e-168 589.0
Car06g00140 . 30 494 MLO family AT2G17430 62.2 3.6e-156 548.9
Car17g00565 . 7 456 MLO family AT2G17430 50.4 2.0e-122 436.8
Car05g00852 . 2 412 MLO family AT2G17430 51.1 1.8e-118 423.7
Car03g00574 CST 2 572 MLO family AT2G17480 62.4 1.5e-195 679.9
Car07g00331 CST 7 569 MLO family AT2G17480 62.5 2.8e-194 675.6
Car06g00140 . 5 577 MLO family AT2G17480 58.0 9.7e-179 624.0
Car05g00852 . 12 397 MLO family AT2G17480 55.7 2.0e-131 466.8
Car13g00156 CCT,ECH 8 457 MLO family AT2G17480 52.7 4.7e-125 445.7
Car20g00418 CCT,ECH 8 461 MLO family AT2G17480 50.2 8.9e-124 441.4
Car07g00331 CST 28 388 MLO family AT1G42560 59.9 3.1e-122 435.6
Car03g00574 CST 30 391 MLO family AT1G42560 58.0 1.1e-119 427.2
Car06g00140 . 30 389 MLO family AT1G42560 56.7 3.6e-110 395.6
Car05g00852 . 12 313 MLO family AT1G42560 54.3 4.4e-100 362.1
Car03g00574 CST 7 392 MLO family AT5G65970 64.2 5.3e-143 505.0
Car07g00331 CST 8 389 MLO family AT5G65970 63.6 5.5e-140 495.0
Car06g00140 . 29 389 MLO family AT5G65970 65.7 2.2e-136 483.0
Car20g00418 CCT,ECH 2 379 MLO family AT5G65970 51.6 1.2e-105 380.9
Car17g00565 . 2 379 MLO family AT5G65970 50.3 1.4e-103 374.0
Car01g01028 CCT,CST 5 548 MLO family AT5G53760 69.9 6.8e-214 740.7
Car15g00303 . 2 553 MLO family AT5G53760 68.9 8.9e-214 740.3
Car09g00788 CCT,CST 10 325 MLO family AT5G53760 60.4 9.2e-118 421.4
Car18g00811 . 7 495 MLO family AT2G39200 66.8 3.3e-192 668.7
Car13g00156 CCT,ECH 8 536 MLO family AT2G39200 63.7 5.7e-192 667.9
Car20g00418 CCT,ECH 8 509 MLO family AT2G39200 67.2 3.1e-190 662.1
Car17g00565 . 8 503 MLO family AT2G39200 66.1 2.7e-186 649.0
Car04g01437 . 7 557 MLO family AT2G39200 60.9 1.1e-184 643.7
Car08g00870 . 6 415 MLO family AT4G24250 54.5 1.2e-116 417.2
Car17g00043 . 6 435 MLO family AT4G24250 51.3 4.5e-111 398.7
Car01g01028 CCT,CST 1 551 MLO family AT1G26700 67.6 2.9e-209 725.3
Car15g00303 . 3 553 MLO family AT1G26700 67.8 2.9e-209 725.3
Car09g00788 CCT,CST 1 329 MLO family AT1G26700 58.2 9.8e-117 417.9
Car08g00870 . 1 498 MLO family AT2G44110 59.8 9.6e-164 573.9
Car17g00043 . 1 524 MLO family AT2G44110 57.6 6.2e-163 571.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001805 3 2 2 3 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 2 2 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00565 Car_Chr17 FPKM 24.029057 23.752888 113.90551 109.840004 20.904636 26.425579 16.955126 85.751144 84.055527 83.662361