Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00567 ATGGAAATTGATCTGAACCTAACAGCCAGTGATGTGGGCAAGAATGCATATTGCAATGCAAATTGTGAAGAGGGTCGCTGCAATTGTTGTTTATCCTCTTCAACTTCTTCATGTTCCTCAAATTCATCGCCAGCTCTCGTCTCTTCTTCAACTTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCTAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAGCAGATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAAATGCGCACTTTTGACCTCCAGCCGCAGATCCTCTGCAGGGTCATCAATGTCCACTTACTTGCCAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTGCTTCCCTTGCCAGAGTTCTTAGGCACTGGTCTAGAGGGCAAAGAGTTGGAGGAATTGGCGTTGAATGGAGCTGATGGAGATGGGAGCGGAGTGTCGCCTACTAGATCTACACCTCACATGTTTTGCAAAACACTCACAGCGTCTGATACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCCGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCGTCTCAAGAGCTAATTGCCAAGGACCTACATGGCGTCGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTGACTACTGGATGGAGTCTTTTTGTAAGCCAAAAGAATCTTATTTCTGGGGATGCAGTGCTGTTTTTAAGGGGTGAAAATGGAGAGCTAAGGTTGGGCATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTAATTCAATTGTGGGCAACCAAAATTCTCGTGCAGATGATCTTGCTCGTGTGGTGAAAGCAATATCTACCAAGAGCATATTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAGTTTGTTATATCTTGTCAGAAGTATGTGAAGAGCATCAATAATCCAGTGACCGTTGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCGCCAGAAAGAAGGTTTATCCATACACGATCAAGATCAATGGTTTTTACTATGTTATACAAATATATTTATAGGTATTTGTTTCTTACAGGTTTAATGGTACGATGGGATAAAGACGGTGATCATCAAGAACGTGTTTCACCCTGGGAGATCGAATCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCACCTAACGCCTTTGCTGTAGGGAGGGGCGGTTTTATGGACTTCGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATTGTATCACCGTTTTATGGACGTGATACTACAAAACGTTCCCTGGAGTTCGAGGTGCGATCTTCTGCACATCAAGCATCGGGTGGAGCTGAGAAGTATAGAGGTGACTACGTAAAGGTTCATCCGAACTCATCTTTCACAGGCTTTATGGAATCTGAAAGATTCCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACAAACAAGAAAACCAGAACATTGTTTAGGTGTTTGGGGAAAGTTCAATCTCAGTGACAACTCTTTTAACACATTTCACTCACCAAACTCTAGTTTTTATCACATGGCGTCAAATGGAGCCCAAAACATGTATTTCCCTCGTAGTGAATTTTACAGTACAGGCCAAGCTGCTGCTGTGATGCGCTCAAATGATGGCAACTTTCCAAGAGAGAGTGCCTTGTTCGGCCCATCTGTTGATGCTAGTGTTATGAGCACTACTTCAGGGTCGAATATAAGGAATTCAAAGGATGAAAATGTGAATGAGAATTCAACTGGCTGTAGACTTTTTGGCTTTTCCTTGACTACAGAAACTGCTACAAACATGCAGAGTTCAGGGAAGAGGAGTTGTACTAAGGTTCACAAACAAGGTAGTCTAGTGGGAAGAGCCATTGATCTCTCTAGACTCAATGGCTATACTGATCTGCTTTCTGAACTGGAGCGCCTGTTTTGCATGGAAGGACTCTTGAAAGATCCTGATAAAGGATGGCGTGTACTGTACACCGACAACGAGAACGACGTAATGGTTGTTGGGGATTATCCATGGCTTGACTTCTGTGATGCGGTTTCAAAAATCCATATATACACCCAAGAAGAAGTGGAGAAGATGACAAATGGAGTGATCAGCGATGATACTCAAAGCTGCTTAGACCAAGCTCCTTTGTGTATGGAAGCCTCAAAATCCTCTTCAGTGGGCCAACCTGATTCTTCTCCCACAGTAGTAAGAGAGTTTTAA 2349 44.15 MEIDLNLTASDVGKNAYCNANCEEGRCNCCLSSSTSSCSSNSSPALVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPEFLGTGLEGKELEELALNGADGDGSGVSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSLFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPNSIVGNQNSRADDLARVVKAISTKSIFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFIHTRSRSMVFTMLYKYIYRYLFLTGLMVRWDKDGDHQERVSPWEIESSVSLPPLSVQSSPRLKKLRTSLQAAPPNAFAVGRGGFMDFEDSIRSSKVLQGQENVGIVSPFYGRDTTKRSLEFEVRSSAHQASGGAEKYRGDYVKVHPNSSFTGFMESERFLKVLQGQEICSLRPQTRKPEHCLGVWGKFNLSDNSFNTFHSPNSSFYHMASNGAQNMYFPRSEFYSTGQAAAVMRSNDGNFPRESALFGPSVDASVMSTTSGSNIRNSKDENVNENSTGCRLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLLSELERLFCMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWLDFCDAVSKIHIYTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSSPTVVREF 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5251553 5257911 + Carg22591-RA Car17g00567 164939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00567 782 Pfam Auxin response factor 296 353 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car17g00567 782 ProSiteProfiles PB1 domain profile. 653 737 IPR000270 GO:0005515
Car17g00567 782 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Car17g00567 782 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00567 Car-Chr17:5251553 Car10g00012 Car-Chr10:62700 6.05E-28 dispersed
Car17g00567 Car-Chr17:5251553 Car20g00416 Car-Chr20:2338120 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5053 PF02362 B3 8.50E-21 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00567 - - cmo:103501935 1289.63