Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00575 ATGTCTTCCAACAGCTTATGGGTCGGAAACTTGTCCATGGATGTCACCGATGCGGATCTCATGAATTTGTTTGCGCAGTTTGGTGCGCTTGATAGTGTTACTTCCTATTCCTCCAGGAGCTTCGCTTTCATCTACTTCAAGCATATGGAGGATGCCCAAGCGGCTAAGGACGCTCTTCAGGGTTTTTTTCTGCGTGGGAGTTCTATCAAGATCGAGTTTGCGAGACCGGCCAAACCTTGTAGGAATTTGTGGGTGGGTGGTATTAGCCCAGCTGTTTCAAGGGAGCAACTTGAAGAGGAATTTTCCAAATTTGGTAAAATTGATGAATTTAAGTTTTTGCGAGATCGGAATACAGCATTTATTGAGTATGTTCGATTGGAAGATGCATCACAAGCTTTGAGAATTATGAATGGAAAACGCATTGGTGGAGACCAGATTCGAGTTGATTTTCTTCGGTCACAGCCAATGAGAAGAGATCAGTGGCCTGACACCAGAGATGGGCATGGACAGCTTCAGGGTAGAAATGTGGGAATGGGAGATTTCCAATCTGGTTATAAAAGACCCCTGCATGCTCAATCTTCGGAGTTGCGTAGAGATGGACCTCCCAGTAAGGTTTTGTGGATTGGTTATCCTCCATCTGTTCAAATTGATGAGCAAATGCTCCACAATGCGATGATTTTATTTGGTGAGATAGACAGAATTACAAGTTTCCATTCTAGGCATTTTGCATTTGTAGAATTTAGAAGTGTTGATGAAGCACGGCGTGCGAAGGAGGGTCTACAAGGACGGCTTTTTAATGATCCTCGGATTACTATCATGTTTTCAAACAGTGATCCGGCACCTGTGAAAGAGAACCTTGGCTTTTATCCTGGTGGTAAAGAGACTAGGCCTGATATGTTTTTCAATGAGCATCAAATCCGTCCTCCACAAATGGACCTGTTGGGACATCCTCACCCAATGGTGCAAAATAAGTTTCCTGGACCACTGCCATCTAGTGGCATTCTTGGACAAAATACGGCAGTAAGACCACCGCCCTTTGGTCCTCCACAGGGTATCTCAGGCCCCCCAGATTTTAATGACTTGGTGACATCTCATAGTTTTCAGGATGCAAATTCAAAAAATATGATTGGTCCAAATTGGAGAAGGCAATCTCCTCCGACACCAGGGATACTTTCTTCTCCAGCTACTGGTATTCGTCCACCTCCACCGGTCAGGTCCACTCCAAGTACATGGGATGCTTTGGATGTAAATCAATTCCATAGGGATTCTAAACGTTCAAGGATAGATGGTCCAACATCCTTGGATGATGCTGCTTTTCCTCCAAGAAAAATGGATAACCGGAGCATGGGTTTTGATCAGCAATATGGGGTTCGTCCAATAAGTGATGGAGGTTCTTCTCTTCCATATGCCAATGCTCCAGCAAAGACTCCTGCTATACCTATAGTTGCAAGGGCTCCAGTTAGTGGTCGTGGCCAGAGCCATGCTGAAAATGATTTTGTATGGCGTGGAATAATTGCCAAGGGAGGAACGCCTGTTTGTCATGCTCGTTGTGTTCCAATAGGCGAAGGAATAGGAAGTGAGCTTCCTGAAGTAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAGCTCACTAAACATTATGCTGAGGCCACTGGATTCGACATCGTCTTTTTCTTGCCAGATAGCGAGGATGATTTTGCATCCTATACTGAATTCCTGCGTTATCTAGGTGCAAAAGATCGTGCAGGTGTTGCTAAGTTTGATGATGGAACTACAATGTTTTTGGTTCCTCCTTCAGAGTTTTTGAGAAAAGTCTTGAAAGTTTCTGGTCCAGAACGGCTTTATGGTCTTGTTCTCAAATTTCCTCAGGTGTCTATTAGTGAACCTACTCACCAACAATCATATCTACCCATGCCTACATCTGACTATGGTGAGAGACAGCAGGTTTTGTCTTCACAAACTGAATATGGGTCAGTGCCTTCAAAGCAGGAGCAACTTCCGATGGATTATAATAGGGTTTTGCATGATGAAATTAAGGAGCCCCCAAAAACACTTCTGCCCGCAAGTGAGCCATCAGCAGTTCAGCCCTTGCCTCAAGAATATGTTGCTAATAATAATACGGCTGCAATCTCAAAAGCTGGGTTAACATTAACACCCGAGCTTATTGCTACCTTGGTTTCCTTACTGCCTGGTAAGTCACAGTCATCTAGTTTAGAAAGTGCCAAACAACCGGCAGCCTCACCACAGCCTCCAGTTACTCCTGTTGTTTCTAATAAAGGGGCTACATCTGAGGGATGGATGGTAGGTCATCAATCTTCTGATCAAACCGGTCAGCCATTTCAGCAAATGGGAAATCATTATAATCCTCAGAGTCACAGCCTTTCTCAATTTCAACCTTATCCACCTCTCCCTCAGACACCTAACCAGCTTGCACCACAGGCCACGGGGACCACCCAAATCCAAGAAGCTGCTGTCAGTCTGCCACAGCAGCAGCAGCAGCAGCAGCAGTTACCTATTCCTTACAGGCCTTTATCTACGTATTCTGCCCCTCCTGAAAATGCACAAGCTTCTGGTCTGCCCTTGGTCAATCCTCAGTATCATCATGATAATTCGCAAATTAGCCAGAGAGGTTATGGATCGGTCAATGGAGTTGACACATCTGGCTATGGTGCACCAGTTATGCAGCAATCAGCAAATACTGTGACCTTATCTAATCAAGGTCAGGGTTCTACGACACAGTCACAACCTATTACTCAATTAGCATCTGATAGGGTGAATTCCGAGCCTCCTTATCAGATGCAGCATTTGCAATCTGCAAACCTTGGCACTGGCACTGGGAGCAGTGATGCTGAGGCAGGCAAGGACCAGAGATATCGATCTACACTCCAATTTGCTGCCAATTTACTCCTCCAGATTCAGCAGCAGCAGCAGCAGAAGCAAGCAGGCTGGGGTTCAGGAAATCAATAA 2967 45.23 MSSNSLWVGNLSMDVTDADLMNLFAQFGALDSVTSYSSRSFAFIYFKHMEDAQAAKDALQGFFLRGSSIKIEFARPAKPCRNLWVGGISPAVSREQLEEEFSKFGKIDEFKFLRDRNTAFIEYVRLEDASQALRIMNGKRIGGDQIRVDFLRSQPMRRDQWPDTRDGHGQLQGRNVGMGDFQSGYKRPLHAQSSELRRDGPPSKVLWIGYPPSVQIDEQMLHNAMILFGEIDRITSFHSRHFAFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSDPAPVKENLGFYPGGKETRPDMFFNEHQIRPPQMDLLGHPHPMVQNKFPGPLPSSGILGQNTAVRPPPFGPPQGISGPPDFNDLVTSHSFQDANSKNMIGPNWRRQSPPTPGILSSPATGIRPPPPVRSTPSTWDALDVNQFHRDSKRSRIDGPTSLDDAAFPPRKMDNRSMGFDQQYGVRPISDGGSSLPYANAPAKTPAIPIVARAPVSGRGQSHAENDFVWRGIIAKGGTPVCHARCVPIGEGIGSELPEVVNCSARTGLDQLTKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKDRAGVAKFDDGTTMFLVPPSEFLRKVLKVSGPERLYGLVLKFPQVSISEPTHQQSYLPMPTSDYGERQQVLSSQTEYGSVPSKQEQLPMDYNRVLHDEIKEPPKTLLPASEPSAVQPLPQEYVANNNTAAISKAGLTLTPELIATLVSLLPGKSQSSSLESAKQPAASPQPPVTPVVSNKGATSEGWMVGHQSSDQTGQPFQQMGNHYNPQSHSLSQFQPYPPLPQTPNQLAPQATGTTQIQEAAVSLPQQQQQQQQLPIPYRPLSTYSAPPENAQASGLPLVNPQYHHDNSQISQRGYGSVNGVDTSGYGAPVMQQSANTVTLSNQGQGSTTQSQPITQLASDRVNSEPPYQMQHLQSANLGTGTGSSDAEAGKDQRYRSTLQFAANLLLQIQQQQQQKQAGWGSGNQ 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5451484 5461568 - Carg18907-RA Car17g00575 164947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00575 988 Pfam SPOC domain 493 612 IPR012921 -
Car17g00575 988 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 270 IPR000504 GO:0003723
Car17g00575 988 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 70 IPR000504 GO:0003723
Car17g00575 988 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 147 IPR000504 GO:0003723
Car17g00575 988 MobiDBLite consensus disorder prediction 423 448 - -
Car17g00575 988 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 277 IPR000504 GO:0003723
Car17g00575 988 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 76 IPR000504 GO:0003723
Car17g00575 988 MobiDBLite consensus disorder prediction 735 799 - -
Car17g00575 988 MobiDBLite consensus disorder prediction 735 805 - -
Car17g00575 988 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 153 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00575 - - - cmos:111456063 1928.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g00176 Car17g00575 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00198 Car-Chr2:1184818 Car17g00575 Car-Chr17:5451484 2.60E-06 dispersed
Car17g00575 Car-Chr17:5451484 Car20g00598 Car-Chr20:3361033 2.80E-06 dispersed
Car17g00575 Car-Chr17:5451484 Car08g00176 Car-Chr8:1075443 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00575 Car_Chr17 FPKM 31.30353 31.52594 41.131306 40.774532 34.31115 36.653774 33.202358 49.786633 47.543564 45.627361