Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00576 ATGGCGAATCTCGTTCCTGGAGTGCTTCTCAAACTGCTACAGCACATGAACACAGATGTGAAGGTTGCTGGAGAACACAGGTCGGCGCTGTTGCAAGTTGTGAGCATAGTGCCGGCATTGGCCGGCGGCGATCTCTCTCCGAATCAAGGTTTTTATCTCAAAGTCTCTGATTCTTCTCATGCCACATATGTGTCACTCCCTGATGAACATGGTGAACTGATTCTTAGTGATAATATTCAATTGGGTCAGTTTATTCATATCGAACGCCTTGAGGCTGCTTCCCCTGTCCCCATTCTTCATGGTGTTCGACCTGTGCCTGGTCGACATCCTTGTGTGGGTACCCCTGAAGATATTGTTGCTACTCATTCTCCTGGGTTTCTTAACAATAATCCTGATCTGAAACCTATGGATAAATTGAAACCAACCCCAAAAGTTGGCATTGGCGTTAGTGGGGAGAAGGAGAAATCTGTGGCTGAGAGGCTCAATGGCAATGCCAAGGAGGATAAAATTGAGAAAAGAGCCTCACTCTTGTGTAGATCCAAGTCTCAGTTGTCGTCGAAATTGACAGTGAATATAGATGTGAAGAAGAAGCCTTTGCGGTCGATGCCTTCATCTCCGACGAGCTGTTATTCGTTACCTTCTTCATTTGAGAAGTTTTCGAACAGCATTAAGCAGCAGGGGAAGGTTAAGCCATTGGCTAATGTAACAACCAAGGTAGGAGCGGTCGAAAAGAACTCGATTCGTTCAGCTAGTCCTGTTGCCAAGAAGATGGGAATGGGACATCAGATCCAACATTTAGTTCAGGGCATTGAGGTTGGAGCCAAGGGTCTGAGGAAGAGTTGGGAAGGGAACAACATGGAGACGAAAAGAAGAGACAATTCGATATTAAGAGCTAGCAAACTTGATGCCAAGCCCGAAGCTCGGGTTACTACTCCTAGAAGAAGTACATTGAGTGACAAGGTAGCAGCAAAGTCATCTAAAGATGATTCTTCAAAGAAGAATGCTGCCAATGGAGCTCTAGATAATGAGGATAGGTCGAATAGGAAAAAATGTTCGAATGGAAAGAAATCATCTTCAAGCGATGCAGTCGGGTTCCCCGGGAACTTGGTGAAGGTTCCTCTTAGTCATAGAAGATTGACTGAAGGGAGTGTTTCATGGGGTTCACTTCCATCATCTCTTGCCAAGCTTGGAAAGGAAGTGATGAGGCACAGAGATGCTGCACAAACAGCAGCAATAGAGGCTATGCAAGAAGCATCGGCGGCAGAGAGCTTACTACGATGTTTAAGTATATTTTCAGAGTTAAATTCTACTGCGAAGGAGGACAACCCACAGCCTGCGGTAGAACAGTTTCTGACCCTTCATGCTAGCCTAACCAATGCTCACATGGTAGCTGAATCACTTTCAAAAACTACTCCATCTGGTTCGACCAATGAGACCGAAGAAACCGCTTCGGAAGAACCAATGAAGGTCACATTAATGGCAAGAAGACAGGCATCTGCTTGGGTTCAGGCTGCTTTAGCCACCAACCTTTCATCGTTTGCAGTTTACAGCCGTGATCCACCCTCGACTCTAAACCCGACCTTACATCTATCCCAAAACCAAAAGAATACATCTGCAAATCATCCTATAGTGGTTTTAGATAACTCATCTAAGAATAGCTCGTCGAAATCCCAAGGGAAGATCCGCCAGATGATAAGCGCTAAACCCGTTGGATCAGGAAATCCAAGTCGAACAAAGGAAGGAGCGACGACACTCGGTCAGAAGGTGCAGCCTCAACCTCCAGCAGAATGGATAAGAGGAAACGGGGTTGACGAAGCAGTCGAGTTGGGTGAGACGTTACGAGTGCAATCCCAGGACTGGTTCTTGAGATTCATGGAAAGGTTCTTGGATGCAGGTGTGGACACTGCAGCCTTGTCGGATAATGGACAAGTAGCAGGAATATTGACTCAGCTGAAGAGTGTAAACGACTGGTTAGATGGAATAGCTTGTTGTAGCAAGGATGAAGAAGACACAGCTCACATTCAAACCGAGACGATCGACAGGCTGAGGAAGAAGATCTACGAGTATCTTCTGATGCACGTCGAGTCTGCAGCCGCTGCACTGGGCGGGGGATCCCAGCCAGTGCCACAGCAGATCGAGGCAACCGAAACAAAAGCAAGAAGGTGA 2166 46.68 MANLVPGVLLKLLQHMNTDVKVAGEHRSALLQVVSIVPALAGGDLSPNQGFYLKVSDSSHATYVSLPDEHGELILSDNIQLGQFIHIERLEAASPVPILHGVRPVPGRHPCVGTPEDIVATHSPGFLNNNPDLKPMDKLKPTPKVGIGVSGEKEKSVAERLNGNAKEDKIEKRASLLCRSKSQLSSKLTVNIDVKKKPLRSMPSSPTSCYSLPSSFEKFSNSIKQQGKVKPLANVTTKVGAVEKNSIRSASPVAKKMGMGHQIQHLVQGIEVGAKGLRKSWEGNNMETKRRDNSILRASKLDAKPEARVTTPRRSTLSDKVAAKSSKDDSSKKNAANGALDNEDRSNRKKCSNGKKSSSSDAVGFPGNLVKVPLSHRRLTEGSVSWGSLPSSLAKLGKEVMRHRDAAQTAAIEAMQEASAAESLLRCLSIFSELNSTAKEDNPQPAVEQFLTLHASLTNAHMVAESLSKTTPSGSTNETEETASEEPMKVTLMARRQASAWVQAALATNLSSFAVYSRDPPSTLNPTLHLSQNQKNTSANHPIVVLDNSSKNSSSKSQGKIRQMISAKPVGSGNPSRTKEGATTLGQKVQPQPPAEWIRGNGVDEAVELGETLRVQSQDWFLRFMERFLDAGVDTAALSDNGQVAGILTQLKSVNDWLDGIACCSKDEEDTAHIQTETIDRLRKKIYEYLLMHVESAAAALGGGSQPVPQQIEATETKARR 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5462702 5465620 - Carg18908-RA Car17g00576 164948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00576 721 MobiDBLite consensus disorder prediction 467 486 - -
Car17g00576 721 MobiDBLite consensus disorder prediction 467 481 - -
Car17g00576 721 MobiDBLite consensus disorder prediction 545 595 - -
Car17g00576 721 Pfam Plant protein of unknown function (DUF936) 4 701 IPR010341 -
Car17g00576 721 PANTHER EXPRESSED PROTEIN 1 720 IPR010341 -
Car17g00576 721 MobiDBLite consensus disorder prediction 281 368 - -
Car17g00576 721 MobiDBLite consensus disorder prediction 569 590 - -
Car17g00576 721 MobiDBLite consensus disorder prediction 338 355 - -
Car17g00576 721 MobiDBLite consensus disorder prediction 282 309 - -
Car17g00576 721 PANTHER DUF936 FAMILY PROTEIN 1 720 - -
Car17g00576 721 MobiDBLite consensus disorder prediction 701 721 - -
Car17g00576 721 MobiDBLite consensus disorder prediction 545 562 - -
Car17g00576 721 MobiDBLite consensus disorder prediction 122 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00576 - - - csv:101214568 1137.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g00175 Car17g00576 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00004 Car-Chr12:28240 Car17g00576 Car-Chr17:5462702 2.94E-13 dispersed
Car17g00576 Car-Chr17:5462702 Car11g00468 Car-Chr11:2566903 3.24E-26 dispersed
Car05g00842 Car-Chr5:8319110 Car17g00576 Car-Chr17:5462702 2.61E-15 transposed
Car08g00698 Car-Chr8:4474369 Car17g00576 Car-Chr17:5462702 1.24E-07 transposed
Car17g00576 Car-Chr17:5462702 Car08g00175 Car-Chr8:1071366 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1277 . . . . . Bpe14g01063 . . . Cmo17g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00449 . Bda11g00478 Bda13g00251 . . Bma02g00967 . . . . . Cma17g00609 Car08g00175 Car17g00576 . Cpe17g01086 . . . . . . . . . . . . . . . . . Cme11g02453
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009199 1 1 2 1 2 1 2 0 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00576 Car_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.720139 0.318704 0.402429