Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00585 CGGGGCTCCGTTCTTTGGAATTGGATCAGCCCAATCGCTCTCTATACCTTCCAATCCATTTACACTTATTTGTTTGAGGTTCACAAGGCCGATCACCGCTTCAACAAAGCGTTTACGAGGTCAGGTGAAGAGGAAGAAGGAGGAGGTGGAATTTCCAAAATTCAGCGACCAGGATCAGGGGGCGATTTGCCCCAGGGTGGCGAGTTCAACCCTTATCCTATTGCACGGAGGGTAAATTCCTCTCATACCGTGGTCATGGATGATGACATTGAGAGTGCTAGTCTGGGGGTATACCAGGACAGACCAAGGACTTTCCCCGACATGCGTAGTAAAGTCAACACCCCATTGATATTTCGAATTTTGATGGGGATAAATATTCGTGTTCTCTTAGTACTTCTTCTGTTCGCATTTGGATTAATATTCTATGTTGGAGCAAGAACTTCCCCTATTATTGTGTTTGTCTTCTCGGTTTGCATTGTCAGCTTCTGCTTTTCAATATATCTCACCAAATGGGTGCTCTCGAAAGATGAAGGGCCACCGGAGATGGCTCAGATTTCAGAAGCAATACGTGATGGGGCAGAAGGTTTCTTTAGGACGCAGTATAGTACCATCTCTAAAATGGCTATGTTACTTGCAGTAGTGATTCTTTGCATATACTTGTTTCGTAGTACTACTCCTCAACAAGAATCTTCTGGAATAGGGAGGTCAACAACTGCCTATATTACTGTTGCAGCATTTCTGTTAGGAGCCTTGTGCTCAGGTATTGCAGGGTATGTTGGAATGTGGGTTTCAGTTCGTGCGAATGTCAGGGTCTCTAGTGCTGCCAGACGGTCTGCGAGGGAGGCATTGCAGATCGCTGTTCGGGCTGGTGGTTTTTCTGCCATAGTTGTTGTTGGCATGGCTGTTATTGGTATAGCCATCCTGTATGCTTCCTTTCATGTTTGGTTGGATGTGGGTTCGCCAGGTTCAACCAAGGTTACCGACTTGCCTCTTCTCCTTGTGGGTTACGGTTTTGGGGCTTCTTTCGTTGCCCTATTTGCTCAGTTGGGTGGTGGTATCTATACTAAAGCTGCTGATGTTGGAGCAGACCTTGTTGGAAAGGTTGAGCAGGGGATACCAGAAGATGATCCTAGAAATCCTGCTGTTATTGCAGATCTGGTTGGGGACAATGTGGGTGATTGTGCCGCCCGAGGTGCAGATCTTTTCGAAAGCATTGCTGCTGAAATCATTAGTGCCATGATACTTGGGGGAACAATGGCTCAACGCTGTAAAATTGAAGATCCATCTGGTTTCATTTTATTTCCGCTGGTAGTACACTCCTTTGATCTGGTGATTTCATCAATTGGCATTCTCTCTATCCGGAGGGGTACTCGTGAATCTGGTGTGAAGAGTCCGGTAGAGGATCCAATGACTATTCTGCAGAGAGGATATTCTGTCACTATTGTTTTGGCTGTTATAACATTTGGCGTGTCTACCCGGTGGTTGCTTCATACTGAACAAGCACCTTCTGCATGGTTCAACTTTGCCTTGTGTGGCTTGGTTGGTATTATAACGGCTTACATTTTTGTCTGGATCACCAAATACTACACTGACTACAAGCATGAGCCTGTGCGTTCATTAGCCCTTTCTAGCTCCACAGGCCATGGGACAAACATAATTGCTGGAGTCAGCTTGGGCCTGGAATCAACAGCACTTCCCGTTCTTGTTATTAGTGTTTCTATTGTTTCAGCTTTCTGGTTGGGTCGCACATCAGGACTTGTGGATGAAGATGGAAACCCAACAGGTGGGCTATTTGGTACTGCTGTAGCAACAATGGGAATGCTCAGCACTGCTGCCTATGTTCTCACAATGGATATGTTTGGGCCAATAGCTGATAATGCTGGTGGAATTGTTGAAATGAGTCAGCAGCCAGAAAGCGTTCGGGAGATTACTGATCTTCTTGATGCAGTAGGTAATACAACTAAAGCTACCACAAAAGGTTTTGCCATTGGCTCTGCAGCCCTTGCATCCTTCCTACTTTTTAGTGCTTATATGGATGAGGTAGCTACATTCGCTCATGAACCTTTTAAACAGGTAGATATTGCAATTCCAGAAGTTTTCGTTGGTGGTTTGTTGGGTTCCATGCTTATTTATCTCTTTAGTGCTTGGGCCTGCTCTGCTGTTGGCCGAACAGCCCAAGAGGTTGTAAAGGAAGTTAGAAAACAGTTCCTTGAGAGGCCTGGTATAATGGACTATACGGAGAAACCAGAATATGGACGCTGCGTTGCTATTGTAGCATCAGCATCTCTAAGGGAGATGATTAAACCTGGTGCTTTGGCTATCATTTCTCCCATGGCAGTTGGCTTCCTCTTTAGAATATTGGGACACTACACCGGGCAACCGCTTCTAGGGGCCAAGGTCGTTGCTGCGATGCTGATGTTCGCAACAGTTTCCGGTATTCTCATGGCCCTTTTTCTTAACACAGCAGGGGGTGCCTGGGACAACGCCAAGAAGTATATAGAGACTGGGGTTCTTGGAGGCAAAGGTAGCGATAGTCATAAAGCAGCCGTAACCGGGGACACCGTTGGTGACCCATTCAAGGACACAGCAGGGCCTTCCCTTCACGTTCTGATAAAAATGCTCGCAACCATAACGCTGGTGATGGCCCCGATCTTTCTCTAA 2661 46.34 RGSVLWNWISPIALYTFQSIYTYLFEVHKADHRFNKAFTRSGEEEEGGGGISKIQRPGSGGDLPQGGEFNPYPIARRVNSSHTVVMDDDIESASLGVYQDRPRTFPDMRSKVNTPLIFRILMGINIRVLLVLLLFAFGLIFYVGARTSPIIVFVFSVCIVSFCFSIYLTKWVLSKDEGPPEMAQISEAIRDGAEGFFRTQYSTISKMAMLLAVVILCIYLFRSTTPQQESSGIGRSTTAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYASFHVWLDVGSPGSTKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAQRCKIEDPSGFILFPLVVHSFDLVISSIGILSIRRGTRESGVKSPVEDPMTILQRGYSVTIVLAVITFGVSTRWLLHTEQAPSAWFNFALCGLVGIITAYIFVWITKYYTDYKHEPVRSLALSSSTGHGTNIIAGVSLGLESTALPVLVISVSIVSAFWLGRTSGLVDEDGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVATFAHEPFKQVDIAIPEVFVGGLLGSMLIYLFSAWACSAVGRTAQEVVKEVRKQFLERPGIMDYTEKPEYGRCVAIVASASLREMIKPGALAIISPMAVGFLFRILGHYTGQPLLGAKVVAAMLMFATVSGILMALFLNTAGGAWDNAKKYIETGVLGGKGSDSHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLVMAPIFL 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5581760 5593544 + Carg18918-RA Car17g00585 164957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00585 886 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 148 886 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Car17g00585 886 MobiDBLite consensus disorder prediction 39 64 - -
Car17g00585 886 Pfam Inorganic H+ pyrophosphatase 160 881 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00993 Car-Chr12:9955228 Car17g00585 Car-Chr17:5581760 7.69E-10 dispersed
Car17g00585 Car-Chr17:5581760 Car11g00393 Car-Chr11:2159840 5.81E-153 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00585 K23025 - csv:101217198 1447.18