Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00595 ATGCCGTCCGTTTATGGAGATCGTTTGACTACCTTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGAAAGGTATCTGGACCAGTCGTCGTGGCAGATGGAATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATTTGATTGGTGAAATCATTAGATTAGAAGGAGATTCTGCCACAATTCAGGTTTACGAGGAAACTGCTGGGTTGATGGTGAATGACCCTGTTTTACGTACTCATAAACCTCTGTCAGTGGAGTTAGGGCCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCAAAGAGATCAGGAGATGTCTACATTCCTCGTGGTGTTGCTGTCCCGGCACTTGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTATTAACAGGTGGAGACTTGTATGCTACTGTCTTCGAGAATAGTCTAATGGAGCATCGCATTGCACTTCCTCCTGATGCTATGGGGAAAATTACCTATATTGCACCACCTGGTCAATATTCATTGAAGGATACTGTTTTAGAGCTTGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGAATTGGCCTGTCCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACTGGGCAGCGTGTTCTTGATGCACTCTTCCCTTCTGTTCTTGGTGGAACATGTGCCATTCCAGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATACTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAACGAAATGGCTGAAGTTCTTATGGACTTTCCTCAATTGACAATGACACTGCCTGACGGTCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGTATTACTTTGGCTGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCTACATCTCGATGGGCAGAAGCACTACGTGAAATATCTGGACGACTGGCAGAAATGCCAGCAGATAGTGGATATCCTGCATACCTAGCAGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAATGTCTTGGTGGGCCAGAACGGACTGGTAGTGTTACCATTGTCGGTGCAGTTTCTCCACCTGGAGGAGATTTCTCAGATCCAGTGACATCTGCCACCCTCAGTATTGTCCAGGTGAACGTTTTTCTAGACTATTCTAATCTAGTTTTCTGGGGTCTAGATAAGAAGCTTGCTCAGAGGAAGCACTTCCCTTCCGTGAACTGGCTAATTTCATACTCAAAATACTCTACTGCGTTGGAATCTTTCTACGAGAAGTTTGACCCAGATTTTATTAACATCAGGACGAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGGAAGGATGCCTTGGCCGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTCGCTCAGAATGCATTTACTCCGTACGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGCAATATCATTCATTTCTACAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGGCAAAGGATAACATACACTTTGATTAAGCATCGGTTGGGAGATCTGTTCTACCGTCTCGTGTCTCAGAAGTTCGAGGATCCAGCTGAAGGAGAAGAGGCTCTGGTTGAGAAGTTCAAGAAGCTGCATGAAGATCTGACAAATGGGTTCCGTGCTCTGGAGGATGAAACTCGATAA 1902 44.53 MPSVYGDRLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLLTGGDLYATVFENSLMEHRIALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKQFTMLQNWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVNVFLDYSNLVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQRITYTLIKHRLGDLFYRLVSQKFEDPAEGEEALVEKFKKLHEDLTNGFRALEDETR 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5663867 5669507 + Carg18928-RA Car17g00595 164967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00595 633 Coils Coil 611 631 - -
Car17g00595 633 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 468 IPR000194 GO:0005524
Car17g00595 633 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Car17g00595 633 Hamap V-type ATP synthase alpha chain [atpA]. 19 632 IPR022878 GO:0046034|GO:0046961
Car17g00595 633 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Car17g00595 633 ProSitePatterns ATP synthase alpha and beta subunits signature. 459 468 IPR020003 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00183 Car-Chr13:2127621 Car17g00595 Car-Chr17:5663867 1.03E-61 dispersed
Car17g00595 Car-Chr17:5663867 Car18g00906 Car-Chr18:9874969 7.74E-25 dispersed
Car13g00184 Car-Chr13:2129300 Car17g00595 Car-Chr17:5663867 8.93E-28 transposed
Car17g00595 Car-Chr17:5663867 Car08g00736 Car-Chr8:4734982 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00595 K02145 - csv:101216234 1206.43