Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00597 ATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAACCATGCACAGCATTCGATGCACACGCAATCTGTGCAAGAGCAGGAACATCATGACTTTCATTACACGAGTAATGGGAATGCATTGGCTGATGAGCATGAAAATGAAGGTCATGGCATTATGGTTGTGGAAAGGGAAGCTCCATCTGACCATGGCGACCTTGCTGAGAATCGTGGTGTAATGGTGGATCGTGGAGGTGATAACTGTGATCAACTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGACACTGTCTCGCCAGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTATTCGTGTTCCCTCTATACCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAACGTAATAAAGGCCAGTTCACATCCTCTAAACCAACTCATGAAGATTCATCATTGGCCATAACAAGTTGGGAATCAAATGAGAATTGGGCTACCGATGGAAATGGTTCCCAACAACAAGAAATTCTCTGCCGACATTGTGGCATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTTATGTGGGCAAACAAGATCTTTGAATGGGCATCCTTATCTGCTTGCTCTCTGGTTTTCATTCAATCAGCTGGGCATATCAAGGATATGCCCTCCAGATCCACGTGGGACATTTCTGATTGTCGTCTCTTTGCTGATTGGGTCAATAAAGGCACCTATGGTGCTTCCTGGTTTAAACAATACTTGGTTCAAGTATCATGGGGTAGTAATCCTTTCAAAGGAAGATGCAAGATTTTAAGGTTCTCTTCTGTTGGTAGAAAGGCTCTTCTGTACCTATGGCAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCATCATTCAGTAGAAATGAGAATGTTGTGCAGAATGGAGACTCGGAGTCCAACCCAAAATGTGCTTAG 1176 44.3 MDGIHASDGRMHMNHAQHSMHTQSVQEQEHHDFHYTSNGNALADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDTVSPEKVQAVLLLLGGREVPIRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPTHEDSSLAITSWESNENWATDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKIFEWASLSACSLVFIQSAGHIKDMPSRSTWDISDCRLFADWVNKGTYGASWFKQYLVQVSWGSNPFKGRCKILRFSSVGRKALLYLWQGTLRDLSKAPNQGGQASSFSRNENVVQNGDSESNPKCA 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5676352 5682027 - Carg18930-RA Car17g00597 164969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00597 391 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Car17g00597 391 MobiDBLite consensus disorder prediction 362 391 - -
Car17g00597 391 Pfam tify domain 84 112 IPR010399 -
Car17g00597 391 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Car17g00597 391 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Car17g00597 391 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355|GO:0043565
Car17g00597 391 Pfam CCT motif 155 197 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00734 Car17g00597 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01171 Car-Chr11:9390946 Car17g00597 Car-Chr17:5676352 2.88E-64 dispersed
Car12g00188 Car-Chr12:1159979 Car17g00597 Car-Chr17:5676352 3.28E-34 dispersed
Car17g00597 Car-Chr17:5676352 Car19g00359 Car-Chr19:5475519 6.37E-62 dispersed
Car17g00597 Car-Chr17:5676352 Car08g00734 Car-Chr8:4721919 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5055 PF06203 CCT 1.20E-14 CL0281 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00597 - - cmo:103500623 513.842