Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00608 ATGGCATCGGTAACCAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCTAACCTGAAAAGACTAAATCTTGCTAGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATGCCTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCCCTATTCACATTGGATCTGTCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTGGCATCAGCACTATGAATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTTCCTCTTGATAACCTGAATGTTGAAAATAATCGTTTCACTGGCTGGATCCCTAATCAACTGAAGAACATTAATCTGCGGAAAGATGGCAACTCCTGGAGCTCAGGTTCTGCACCCCCTCCCCCACCTGGTACTCCCCCAGCCACCAGAAGGAACCGGAGTCACAGTTCTGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGATTAGGTGGTGGTGCCATTGCAGGAATTATCATCTCTGTGCTTGTCGTTGGAGCGGTTGTAGCATTCTTCATCGTCAAGAGGAGATCGAAGAGATCATCTTCAGACATTGAAAGGCTTGATAATCAACCCCTGCAACCTCTTAAAATGACTGCAACACAAGAAATGAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACAGCATTTGACACTTCTGCTGCAATTAATCTCAAACCCCCACCTATCGATCGTCATAAATCGTTTGATGAAGACGACTTCTCAAAACGAGCACCAGTCGTCAAGAAGGCCAGTGCAGCTCCTATTAATGTAAAGGCATATTCAATAGCAGACCTGCAAATGGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTATATCGGGCTGAGTTTGATAACGGAAAGGTTCTTGCGGTGAAAAAGATAAACTCGTCTGCACTACCGAGGGAATTAGCTGAAGATTTCACTGACATTGTTTCTCAAGTCTCCCAGTTACACCATCCCAATATAACCGAGCTGGTGGGTTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAATATGGCTCGCTTTACGACTTCTTGCATCTATCAGATGAATACAACAGACCTCTAATATGGAATTCCCGCATTAAGATTGCCTTGGGAACAGCGCGCGCATTAGAGTATCTTCATGAAGTATGCTCCCCGTCAATTGTTCATAGAAACATCAAGTCCGCTAACATATTGCTGGATGCCGAATTCAGCCCCCATCTTTCTGATTCTGGACTGGAAAGCTTTGTACCTAATGCAGATCAGGCACTGGATGACGGTGCAAGTTCAGGATACACTGCCCCTGAGGTCACCATGTCCGGCCAATATACGTTGAAAAGCGATGTCTACAGTTTTGGTGTGGTCATGCTGGAACTCCTGACTGGACGCAAACCATTCGATAGTTCAAGGTCGAGGATGGAGCAATCTTTGGTTCGATGGGCTACACCACAGCTTCATGACATTGATGCTTTAACGAAGATGGTAGATCCCGAGCTCAAAGGACTATATCCAGTTAAATCTCTCTCCCGATTTGCAGACGTGATTGCGCTTTGCGTCCAGACTGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTGGAAGCGTTGGTTCGTCTGGTACAGCGAGCTAACATGAGTAAGAGAACAGTTGGGAACGATAATGCAACATCTCCCAGGGGAGGAGAGATGGGTGGAGAGGACACACCATAG 1863 45.14 MASVTNLDVSNNNIGGEIVYQLPPNLKRLNLARNNFNKGIPYSISLMPSLQYLNISHNQLQNPLIDMFGQLTSLFTLDLSFNAMSGNLPQSFSSLSGISTMNLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPNQLKNINLRKDGNSWSSGSAPPPPPGTPPATRRNRSHSSGGSPSNGGSSEGQKSGLGGGAIAGIIISVLVVGAVVAFFIVKRRSKRSSSDIERLDNQPLQPLKMTATQEMKSEETSSTFYPTAFDTSAAINLKPPPIDRHKSFDEDDFSKRAPVVKKASAAPINVKAYSIADLQMATGSFNVENLLGEGSFGRVYRAEFDNGKVLAVKKINSSALPRELAEDFTDIVSQVSQLHHPNITELVGYCSEHGQHLLVYEFHKYGSLYDFLHLSDEYNRPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAEFSPHLSDSGLESFVPNADQALDDGASSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRSRMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTVGNDNATSPRGGEMGGEDTP 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5738112 5753818 + Carg18941-RA Car17g00608 164980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00608 620 ProSiteProfiles Protein kinase domain profile. 315 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00608 620 ProSitePatterns Protein kinases ATP-binding region signature. 321 344 IPR017441 GO:0005524
Car17g00608 620 Pfam Protein tyrosine and serine/threonine kinase 317 587 IPR001245 GO:0004672|GO:0006468
Car17g00608 620 MobiDBLite consensus disorder prediction 166 187 - -
Car17g00608 620 Pfam Leucine rich repeat 4 60 IPR001611 GO:0005515
Car17g00608 620 MobiDBLite consensus disorder prediction 145 189 - -
Car17g00608 620 MobiDBLite consensus disorder prediction 598 620 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car14g01082 Car17g00608 CCT
Car01g00018 Car17g00608 CCT
Car08g00721 Car17g00608 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01906 Car-Chr4:11252302 Car17g00608 Car-Chr17:5738112 1.04E-65 dispersed
Car14g00396 Car-Chr14:1982682 Car17g00608 Car-Chr17:5738112 2.25E-09 dispersed
Car15g01289 Car-Chr15:10058747 Car17g00608 Car-Chr17:5738112 0 dispersed
Car17g00608 Car-Chr17:5738112 Car19g00763 Car-Chr19:8416121 1.32E-123 dispersed
Car14g01081 Car-Chr14:9513853 Car17g00608 Car-Chr17:5738112 3.29E-46 wgd
Car17g00608 Car-Chr17:5738112 Car08g00721 Car-Chr8:4628073 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89477 PF07714 PK_Tyr_Ser-Thr 1.50E-43 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00608 - - csv:101213107 1028.85