Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00613 ATGGAACAACCCATCGCCGCCGGAATCTCAAGTTCCGGCAACCACCTCCCAAAGCCGAAGAACAATAGAAAGAAGCTCATAATCCTAGCCGTGTCTTCAACCCTCCTTCTGGTGGGCATCGTCGCCGGAGTGGTGAGCTCGAGAAACGGCGGCGGCGAGGAGGCTAAAAGGCATGCCATTGTGAAGAGCACGTGTAGCAGCACGTTGTATCCGGATCTGTGCTTTTCGAGCATTTTGAAGAGCGATGGGGCGATGAAGAGAGTTGGTAGTAAAAAGGATGTGATTGAGGTGTCGATTAATATTACGGTTAAAGCGGTGGAGGAGAATTATTTTAAGGTGTTGAAATTGTATGAGTTGAAGAATATTAGTCATAGGGAGAAGATTGCTCTTCATGATTGCCTTGAAACTATTGATGAGACGCTTGATGAGCTTCATAAGGCTACTGTTGACCTCCATGAATACCCAAATAAGAAGTCTCTTAATCAACATGCTGATGATCTCAAGACCTTGCTTAGTTCCGCTATTACTAATCAGGAGACATGCCTCGACGGGTTTTCCCACGACGAGGCGGACAAGAACCTGCGGGACAAGCTAAAAGAAGGTCAAATAGAGGTAGAGCGCATGTGCAGCAATGCGCTAGCCATGATTAAGAACATGACCGATACAGACATAGCCAACTACGAGGCTAAAATGGGAACAACAGCCAACAGAAAGCTCAAGGAAGAGATCAACGACGAGCAAATCCAGTGGCCGGAGTGGCTGTCAGCCGGAGACCGACGTCTGCTGCAATCCTCCTCCGTGAAGCCGGACGTGGTCGTGGCGGCGGATGGCAGCGGGAACTTCAAGACAGTGGCGGCCGCCGTCGCCGCCGCCCCGGTAAAAAGTAGCAAGAGATATGTGATAAGAATTAAAGCTGGGGTTTATAGAGAGAATGTAGATGTGCCAAAGAAGAAGACGAATATAATGTTCATGGGAGATGGAAGAAGTAACACTATAATTACCGGTAGCCGGAATGTCGTCGACGGCAGCACCACTTTTAACTCTGCCACTGTCGCTGCGGTGGGAGAAGGATTTCTAGCGCGTGACATCACGTTCCAAAACACAGCCGGTCCCTCAAAGCACCAAGCGGTGGCTCTCCGTGTCGGAGCAGATCTCTCCGCCTTCTACCAATGCGACATGTTGGCTTATCAAGACACTCTCTACGTCCACTCCAACCGTCAGTTCTACATCAACTGTCTCATTTCCGGCACCGTCGATTTCATCTTCGGAAACGCCGCTGCCGTTTTCCAAGACTGTGATATTCACGCGCGTAGACCAAACTCGGGTCAGAAAAACATGGTCACGGCTCAGGGTCGGTCCGACCCAAACCAGAACACTGGAATCGTTATCCAGAAATCCCGAATCGGAGCCACCTCCGATCTCCGGTCGGTCCAGAAGAGCTTCCCGACGTTCCTCGGAAGACCGTGGAAGGAATATTCTAGAACCGTGATCATGCAGTCGTCGATAAGTGACGTCATTGACTCGAAGGGATGGCATGAATGGAGCGGTAATTTTGCTCTCAACACGTTGTTTTACGGTGAGTATCAGAATACTGGACCGGGGGCTTCGACGAGCGGGAGGGTGACGTGGAAGGGGTTCAGGGTAATTCGAAGTGCCACGGAGGCGGAAGGTTTTACTCCTGGTAAATTTATTGGCGGTGGGAGTTGGTTGCGGGCGACTGGGTTTCCTTTCTCTTTAGGACTATGA 1746 50.52 MEQPIAAGISSSGNHLPKPKNNRKKLIILAVSSTLLLVGIVAGVVSSRNGGGEEAKRHAIVKSTCSSTLYPDLCFSSILKSDGAMKRVGSKKDVIEVSINITVKAVEENYFKVLKLYELKNISHREKIALHDCLETIDETLDELHKATVDLHEYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHDEADKNLRDKLKEGQIEVERMCSNALAMIKNMTDTDIANYEAKMGTTANRKLKEEINDEQIQWPEWLSAGDRRLLQSSSVKPDVVVAADGSGNFKTVAAAVAAAPVKSSKRYVIRIKAGVYRENVDVPKKKTNIMFMGDGRSNTIITGSRNVVDGSTTFNSATVAAVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLISGTVDFIFGNAAAVFQDCDIHARRPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLRSVQKSFPTFLGRPWKEYSRTVIMQSSISDVIDSKGWHEWSGNFALNTLFYGEYQNTGPGASTSGRVTWKGFRVIRSATEAEGFTPGKFIGGGSWLRATGFPFSLGL 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5775345 5778292 + Carg18946-RA Car17g00613 164985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00613 581 Pfam Plant invertase/pectin methylesterase inhibitor 60 215 IPR006501 GO:0004857
Car17g00613 581 ProSitePatterns Pectinesterase signature 1. 295 314 IPR018040 -
Car17g00613 581 Pfam Pectinesterase 270 566 IPR000070 GO:0030599|GO:0042545
Car17g00613 581 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car14g01075 Car17g00613 CCT
Car14g01075 Car17g00613 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01075 Car-Chr14:9490617 Car17g00613 Car-Chr17:5775345 0 dispersed
Car14g01771 Car-Chr14:13895966 Car17g00613 Car-Chr17:5775345 2.28E-143 dispersed
Car16g00047 Car-Chr16:328292 Car17g00613 Car-Chr17:5775345 4.25E-41 dispersed
Car16g01003 Car-Chr16:8466690 Car17g00613 Car-Chr17:5775345 2.17E-12 dispersed
Car17g00613 Car-Chr17:5775345 Car17g01016 Car-Chr17:8060470 9.74E-168 dispersed
Car14g01074 Car-Chr14:9485745 Car17g00613 Car-Chr17:5775345 9.99E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00613 K01051 - csv:101212388 984.171