Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00618 ATGGTGTTTCATTCTCAAGTTCCTTCAAGATATACTTGTAGGCTTCTTGCAATCCCCTGTGGGAGTGTTCCTGAAGATAAATTTAAGAAGGATAATCCAGAGGATGAGCAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGCCCAATCCTAGTAAAGATGAGTTTTGTAGGATTATTGAATCGTATAGACCGAGCATTGTTTACTTACAAGGGGAACGACTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGAAGGTGTTGATTTGTTCACCGTAGAAGCGATTAGTGGGCTCTTTAGTTCTCCGTTGCCCACCACTGTATATTTGGAAATAGCCAATGGAGATGAAGTAGCTGATGCACTTCATTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCACATTTTCTTGTTATGCAGCATGCCATTTCCGTAATGCATTTCTTTCGGTTCTTCAGAGTTCATCTGCTCATACATGGGACGCATTTCAACTTGCACATGCTTCATTTAGGATGTATTGCTTGGGAAACAGCCTTGTTCTTCCTAACAGTAGTCATAATGACGTTAGTGAAGATCTAGGACCACATCTTCTAGGAGAACGTTTGAGAATAAACATTGAACCCCTTGAGAAAGAGGCAGCTGATGATGAAGAAAGTTCATCGGAAGTTCCTTCTGTTAGCATACTTGATCATGATCTTGAAATGAGATTTCTCATATGTGGTGAACCAAGGTCATTGGATGCTTACGTTTTAGGAGCTCTGGAGGATGGTCTTAACGCTCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTCCAGGCAGGAATGCACTCTAATGGTGTTGTGACCATGCGCTGTGACATATCAACATGCAGTTTTGCCCACATCTCACTATTGGTGTCGGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAAATTATAGACAGAAGCGAACCAGTACAGACACTAATAGATGGTGATGGAAGCAAACACTCGCGTGAGCCACGGAAATCTGCTTCAGTTGCTTGTGGGGCAACAGTTTTCGAAGTTAGCATGAAGGTCCCTTCGTGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTTGTACTTGGCATTGCCGGCATTCAGGGTTTGTCTGTAGCTTCTTTTGAGAAGGACGATGCTGAACGCCTCCTTTTCTTCGGTTCAAGGAAGCAAAGAGATTTATTTCTAAACAATTTAACCGATAGCACACCTCCAAGCTGGTTGAAACCACCTGCACCTAGAAAGAGATTGAGAAATGTGAAAGACATAAGCCTTGGTTCTCATGATGCTATTCAACATCTGAAGGTTTCGTCTGGTAACAGAATAGACGGCGAGAACATGGAAATAGGATCGAGGAATGGTTTCAGCACTCCCATGTTTCCACTCCCGAGAAGGAGAGGAATGAAAATTGCCGCAATGAGGCCCATTCCTCACGTTAATCGCCATAAAATGATATCTTTTCGTGGAATAGCTGAGACAGGTGGGCACAATGGAGGCCTGTTTAAAGCTAGTGTTTCTTCTAGTAATTCAGCGAAGCATGTTACTGTAGGTTCAGCTTCAGTTTTGCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACAAATTATTCCCATGAATCCACTACCTTTGAAGAAGCATGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTCTTGCTCTTCGAGGTCATAATCGACTTATTCCTCCTGGTGGGCTTGCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGAAATGGTATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGTAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTATGAAACTTATCTTCTCGAGTATGAATTGGCGCATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGCATTTGTGGCGAGTGGGCTCACTTTGGTTGTGACCGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTACAAGAAGAAGAAAGTTGGTAATGGGTTGTCTCCAGGCTTATCCTCAAGACCAATATGA 2346 42.75 MVFHSQVPSRYTCRLLAIPCGSVPEDKFKKDNPEDEQRYPFPQLNSSGRLEVQVLPNPSKDEFCRIIESYRPSIVYLQGERLENDEVGSLVWEGVDLFTVEAISGLFSSPLPTTVYLEIANGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLAHASFRMYCLGNSLVLPNSSHNDVSEDLGPHLLGERLRINIEPLEKEAADDEESSSEVPSVSILDHDLEMRFLICGEPRSLDAYVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGMHSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIIDRSEPVQTLIDGDGSKHSREPRKSASVACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVVLGIAGIQGLSVASFEKDDAERLLFFGSRKQRDLFLNNLTDSTPPSWLKPPAPRKRLRNVKDISLGSHDAIQHLKVSSGNRIDGENMEIGSRNGFSTPMFPLPRRRGMKIAAMRPIPHVNRHKMISFRGIAETGGHNGGLFKASVSSSNSAKHVTVGSASVLQQKMFPSASQYKQIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLALRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVGNGLSPGLSSRPI 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5813252 5820579 + Carg18951-RA Car17g00618 164990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00618 781 Pfam ARID/BRIGHT DNA binding domain 601 697 IPR001606 GO:0003677
Car17g00618 781 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car14g01069 Car17g00618 CCT
Car14g01069 Car17g00618 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00013 Car-Chr1:69254 Car17g00618 Car-Chr17:5813252 0 dispersed
Car14g01069 Car-Chr14:9464085 Car17g00618 Car-Chr17:5813252 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5056 PF01388 ARID 2.50E-15 CL0123 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00618 - - csv:101214243 1411.36