Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00661 ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTCGAAGATGTTTTCAGTGATTTTAGGGGCCGAAGAAACGGCGTCATCAAAGCTCTCACCGTAGATGTTGAAGAATTCTATCAACAATGTGATCCTGATAAGGAAAATCTATGCTTGTATGGATTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCAGAAGAAGTTCCTCCAGAACTTCCAGAGCCGGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTCCATAGTGACTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAGCTGATAGGAGGCGGCTTTTCAATATGATCAATGATTTGCCAACTGTATTTGAAGTAGTTACAGGTCTTGCGAAGAAACAAGTCAAGGAAAAGGCATCAAGTGCGAATGGTAGCAAATCCAAGTCGAGCCTTAAAACGAGGGAAACTGAAACGCAAGGAGTGTATGTGAGGCAGCCGCTGGCAAGGGAAGACGTAGAGGCGGCATTGTACGAAGAAGACGAAGATGAGCACGGCGACACCTTGTGTGGGGCGTGTGGTGAGAATTATGCAACAGATGAGTTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGAAAGTGTGTTAGAATAACTCCTGCAAAAGCCGTGCACATTAATCAGTACAAATGCCCATCCTGCAGCAGCAAAAGAAGCCGCATTTAA 759 44.66 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPDKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKADRRRLFNMINDLPTVFEVVTGLAKKQVKEKASSANGSKSKSSLKTRETETQGVYVRQPLAREDVEAALYEEDEDEHGDTLCGACGENYATDEFWICCDICEKWFHGKCVRITPAKAVHINQYKCPSCSSKRSRI 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6128488 6131509 + Carg09442-RA Car17g00661 165033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00661 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Car17g00661 252 MobiDBLite consensus disorder prediction 148 167 - -
Car17g00661 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Car17g00661 252 Pfam PHD-finger 199 247 IPR019787 -
Car17g00661 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00661 - - - csv:101222322 484.182
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g00668 Car17g00661 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00146 Car-Chr4:800314 Car17g00661 Car-Chr17:6128488 6.13E-102 dispersed
Car04g00815 Car-Chr4:4749888 Car17g00661 Car-Chr17:6128488 4.23E-95 dispersed
Car04g01040 Car-Chr4:5967203 Car17g00661 Car-Chr17:6128488 8.57E-61 dispersed
Car05g00354 Car-Chr5:2043992 Car17g00661 Car-Chr17:6128488 1.84E-133 dispersed
Car06g00201 Car-Chr6:1192735 Car17g00661 Car-Chr17:6128488 2.58E-89 dispersed
Car12g01285 Car-Chr12:11936906 Car17g00661 Car-Chr17:6128488 2.93E-125 dispersed
Car16g00783 Car-Chr16:5009989 Car17g00661 Car-Chr17:6128488 3.00E-119 dispersed
Car17g00661 Car-Chr17:6128488 Car08g00668 Car-Chr8:4289205 1.54E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g122 . . . . . . . . Cmo08g00755 Cmo17g00678 . . . . . Cpe12g00597 Cpe17g00469 . . . . . . . . . . . . . . . . . . Lsi02g02913 Csa07g02370 . Cme01g02823 . . . . . . . . . . . . . Car08g00668 Car17g00661 . . Bhi09g00348 . . . . . . Cla09g00078 Cam09g0081 Cec09g0082 Cco09g0081 Clacu09g0089 . Cre09g0076 . . Chy01g02184 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car16g00783 . 1 253 Alfin-like Transcription Factor Family AT1G14510 83.0 1.6e-111 399.4
Car12g00605 CCT,ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 71.1 2.0e-96 349.4
Car05g00354 CCT,ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 69.0 5.9e-93 337.8
Car12g01285 . 9 243 Alfin-like Transcription Factor Family AT1G14510 69.9 7.7e-93 337.4
Car04g00815 . 4 213 Alfin-like Transcription Factor Family AT1G14510 83.3 2.7e-90 328.9
Car17g00661 CST 10 249 Alfin-like Transcription Factor Family AT1G14510 66.4 1.8e-89 326.2
Car05g01330 . 9 268 Alfin-like Transcription Factor Family AT1G14510 61.0 3.2e-83 305.4
Car04g00146 . 8 238 Alfin-like Transcription Factor Family AT1G14510 59.8 4.5e-77 285.0
Car06g00201 CST 8 236 Alfin-like Transcription Factor Family AT1G14510 57.0 1.3e-71 266.9
Car08g00668 CST 10 159 Alfin-like Transcription Factor Family AT1G14510 78.0 2.3e-65 246.1
Car14g00046 CST 8 135 Alfin-like Transcription Factor Family AT1G14510 76.2 1.7e-55 213.4
Car04g01040 . 9 155 Alfin-like Transcription Factor Family AT1G14510 66.7 3.5e-53 205.7
Car05g00354 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT5G26210 78.3 2.3e-108 389.0
Car12g00605 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT5G26210 74.0 2.3e-108 389.0
Car12g01285 . 1 243 Alfin-like Transcription Factor Family AT5G26210 74.4 5.2e-105 377.9
Car05g01330 . 1 270 Alfin-like Transcription Factor Family AT5G26210 66.1 1.0e-97 353.6
Car17g00661 CST 1 251 Alfin-like Transcription Factor Family AT5G26210 64.2 1.3e-95 346.7
Car16g00783 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.0 2.7e-93 339.0
Car04g00146 . 5 240 Alfin-like Transcription Factor Family AT5G26210 57.4 4.4e-80 295.0
Car04g00815 . 4 215 Alfin-like Transcription Factor Family AT5G26210 73.2 8.6e-76 280.8
Car06g00201 CST 8 238 Alfin-like Transcription Factor Family AT5G26210 54.5 2.9e-71 265.8
Car08g00668 CST 1 155 Alfin-like Transcription Factor Family AT5G26210 76.1 5.1e-68 255.0
Car14g00046 CST 8 150 Alfin-like Transcription Factor Family AT5G26210 68.0 1.4e-54 210.3
Car04g01040 . 9 150 Alfin-like Transcription Factor Family AT5G26210 67.1 9.3e-54 207.6
Car12g00605 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT3G42790 70.5 2.9e-100 362.1
Car05g00354 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT3G42790 72.8 2.4e-99 359.0
Car12g01285 . 1 243 Alfin-like Transcription Factor Family AT3G42790 71.3 3.0e-97 352.1
Car17g00661 CST 1 251 Alfin-like Transcription Factor Family AT3G42790 61.9 2.2e-92 335.9
Car16g00783 . 3 255 Alfin-like Transcription Factor Family AT3G42790 70.0 3.5e-90 328.6
Car05g01330 . 1 270 Alfin-like Transcription Factor Family AT3G42790 61.3 8.7e-89 323.9
Car04g00146 . 6 240 Alfin-like Transcription Factor Family AT3G42790 59.2 1.5e-80 296.6
Car06g00201 CST 8 238 Alfin-like Transcription Factor Family AT3G42790 55.4 1.1e-72 270.4
Car04g00815 . 4 215 Alfin-like Transcription Factor Family AT3G42790 69.8 7.4e-72 267.7
Car08g00668 CST 1 150 Alfin-like Transcription Factor Family AT3G42790 74.2 9.7e-64 240.7
Car14g00046 CST 8 145 Alfin-like Transcription Factor Family AT3G42790 68.6 7.7e-53 204.5
Car04g01040 . 9 145 Alfin-like Transcription Factor Family AT3G42790 69.1 2.2e-52 203.0
Car04g00146 . 1 240 Alfin-like Transcription Factor Family AT5G05610 76.8 6.6e-110 394.0
Car06g00201 CST 1 239 Alfin-like Transcription Factor Family AT5G05610 70.5 2.6e-98 355.5
Car12g00605 CCT,ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 66.1 4.8e-92 334.7
Car12g01285 . 8 243 Alfin-like Transcription Factor Family AT5G05610 66.1 5.5e-88 321.2
Car05g00354 CCT,ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 64.1 7.1e-88 320.9
Car17g00661 CST 10 251 Alfin-like Transcription Factor Family AT5G05610 63.0 2.7e-87 318.9
Car16g00783 . 9 255 Alfin-like Transcription Factor Family AT5G05610 63.3 1.6e-84 309.7
Car05g01330 . 8 270 Alfin-like Transcription Factor Family AT5G05610 57.7 4.2e-80 295.0
Car04g01040 . 1 177 Alfin-like Transcription Factor Family AT5G05610 75.3 5.9e-74 274.6
Car04g00815 . 4 215 Alfin-like Transcription Factor Family AT5G05610 61.8 8.2e-68 254.2
Car14g00046 CST 1 157 Alfin-like Transcription Factor Family AT5G05610 75.9 1.2e-66 250.4
Car08g00668 CST 10 181 Alfin-like Transcription Factor Family AT5G05610 63.6 6.5e-57 218.0
Car04g00146 . 43 240 Alfin-like Transcription Factor Family AT3G11200 78.6 9.3e-93 337.0
Car06g00201 CST 43 239 Alfin-like Transcription Factor Family AT3G11200 72.3 1.2e-79 293.5
Car12g00605 CCT,ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 64.9 3.9e-75 278.5
Car05g01330 . 59 270 Alfin-like Transcription Factor Family AT3G11200 62.4 4.3e-74 275.0
Car17g00661 CST 44 251 Alfin-like Transcription Factor Family AT3G11200 63.5 5.3e-72 268.1
Car05g00354 CCT,ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 62.1 2.0e-71 266.2
Car12g01285 . 44 243 Alfin-like Transcription Factor Family AT3G11200 63.9 2.6e-71 265.8
Car16g00783 . 44 255 Alfin-like Transcription Factor Family AT3G11200 64.8 1.1e-69 260.4
Car04g00815 . 1 215 Alfin-like Transcription Factor Family AT3G11200 61.9 7.2e-69 257.7
Car04g01040 . 43 177 Alfin-like Transcription Factor Family AT3G11200 82.4 2.5e-61 232.6
Car14g00046 CST 43 157 Alfin-like Transcription Factor Family AT3G11200 81.0 1.7e-49 193.4
Car08g00668 CST 44 162 Alfin-like Transcription Factor Family AT3G11200 70.8 2.0e-42 169.9
Car16g00783 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 6.6e-76 281.2
Car12g00605 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 5.3e-65 245.0
Car12g01285 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.3 9.0e-65 244.2
Car05g00354 CCT,ECH 1 155 Alfin-like Transcription Factor Family AT2G02470 78.7 2.0e-64 243.0
Car08g00668 CST 10 158 Alfin-like Transcription Factor Family AT2G02470 76.5 3.2e-62 235.7
Car17g00661 CST 10 160 Alfin-like Transcription Factor Family AT2G02470 76.2 3.2e-62 235.7
Car04g00815 . 4 123 Alfin-like Transcription Factor Family AT2G02470 85.8 7.6e-56 214.5
Car05g01330 . 1 178 Alfin-like Transcription Factor Family AT2G02470 62.9 1.7e-55 213.4
Car14g00046 CST 8 165 Alfin-like Transcription Factor Family AT2G02470 66.0 5.5e-54 208.4
Car04g00146 . 8 155 Alfin-like Transcription Factor Family AT2G02470 68.2 7.9e-53 204.5
Car04g01040 . 9 155 Alfin-like Transcription Factor Family AT2G02470 68.0 7.9e-53 204.5
Car06g00201 CST 8 174 Alfin-like Transcription Factor Family AT2G02470 61.5 7.9e-53 204.5
Car12g00605 CCT,ECH 1 167 Alfin-like Transcription Factor Family AT5G20510 77.4 3.0e-73 271.9
Car12g01285 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.0 4.3e-72 268.1
Car05g00354 CCT,ECH 1 157 Alfin-like Transcription Factor Family AT5G20510 78.5 6.2e-71 264.2
Car08g00668 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 3.4e-69 258.5
Car17g00661 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 2.9e-68 255.4
Car16g00783 . 9 168 Alfin-like Transcription Factor Family AT5G20510 72.8 1.9e-64 242.7
Car05g01330 . 1 184 Alfin-like Transcription Factor Family AT5G20510 61.1 2.3e-57 219.2
Car04g00146 . 6 157 Alfin-like Transcription Factor Family AT5G20510 63.3 3.4e-53 205.3
Car14g00046 CST 4 170 Alfin-like Transcription Factor Family AT5G20510 59.0 2.9e-52 202.2
Car04g01040 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 4.2e-51 198.4
Car06g00201 CST 7 157 Alfin-like Transcription Factor Family AT5G20510 61.8 2.1e-50 196.1
Car04g00815 . 4 128 Alfin-like Transcription Factor Family AT5G20510 70.9 3.1e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5061 PF12165 Alfin 7.50E-68 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00661 Car_Chr17 FPKM 12.05205 15.307384 13.572955 12.861062 12.530991 13.037317 14.611846 16.071161 14.862832 14.625478