Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g00661 | ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTCGAAGATGTTTTCAGTGATTTTAGGGGCCGAAGAAACGGCGTCATCAAAGCTCTCACCGTAGATGTTGAAGAATTCTATCAACAATGTGATCCTGATAAGGAAAATCTATGCTTGTATGGATTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCAGAAGAAGTTCCTCCAGAACTTCCAGAGCCGGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTCCATAGTGACTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAGCTGATAGGAGGCGGCTTTTCAATATGATCAATGATTTGCCAACTGTATTTGAAGTAGTTACAGGTCTTGCGAAGAAACAAGTCAAGGAAAAGGCATCAAGTGCGAATGGTAGCAAATCCAAGTCGAGCCTTAAAACGAGGGAAACTGAAACGCAAGGAGTGTATGTGAGGCAGCCGCTGGCAAGGGAAGACGTAGAGGCGGCATTGTACGAAGAAGACGAAGATGAGCACGGCGACACCTTGTGTGGGGCGTGTGGTGAGAATTATGCAACAGATGAGTTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGAAAGTGTGTTAGAATAACTCCTGCAAAAGCCGTGCACATTAATCAGTACAAATGCCCATCCTGCAGCAGCAAAAGAAGCCGCATTTAA | 759 | 44.66 | MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPDKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKADRRRLFNMINDLPTVFEVVTGLAKKQVKEKASSANGSKSKSSLKTRETETQGVYVRQPLAREDVEAALYEEDEDEHGDTLCGACGENYATDEFWICCDICEKWFHGKCVRITPAKAVHINQYKCPSCSSKRSRI | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 6128488 | 6131509 | + | Carg09442-RA | Car17g00661 | 165033 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g00661 | 252 | ProSiteProfiles | Zinc finger PHD-type profile. | 196 | 248 | IPR019787 | - | |
| Car17g00661 | 252 | MobiDBLite | consensus disorder prediction | 148 | 167 | - | - | |
| Car17g00661 | 252 | Pfam | Alfin | 11 | 139 | IPR021998 | GO:0006355|GO:0042393 | |
| Car17g00661 | 252 | Pfam | PHD-finger | 199 | 247 | IPR019787 | - | |
| Car17g00661 | 252 | ProSitePatterns | Zinc finger PHD-type signature. | 199 | 245 | IPR019786 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car08g00668 | Car17g00661 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g00146 | Car-Chr4:800314 | Car17g00661 | Car-Chr17:6128488 | 6.13E-102 | dispersed | |
| Car04g00815 | Car-Chr4:4749888 | Car17g00661 | Car-Chr17:6128488 | 4.23E-95 | dispersed | |
| Car04g01040 | Car-Chr4:5967203 | Car17g00661 | Car-Chr17:6128488 | 8.57E-61 | dispersed | |
| Car05g00354 | Car-Chr5:2043992 | Car17g00661 | Car-Chr17:6128488 | 1.84E-133 | dispersed | |
| Car06g00201 | Car-Chr6:1192735 | Car17g00661 | Car-Chr17:6128488 | 2.58E-89 | dispersed | |
| Car12g01285 | Car-Chr12:11936906 | Car17g00661 | Car-Chr17:6128488 | 2.93E-125 | dispersed | |
| Car16g00783 | Car-Chr16:5009989 | Car17g00661 | Car-Chr17:6128488 | 3.00E-119 | dispersed | |
| Car17g00661 | Car-Chr17:6128488 | Car08g00668 | Car-Chr8:4289205 | 1.54E-109 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5061 | PF12165 | Alfin | 7.50E-68 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g00661 | - | - | csv:101222322 | 484.182 |