Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00671 ATGAAAATCGAGTCGATGAGACGGGGAAGAATAAGGGAGAGGATCCGTCGAAGCCATCTTTATACGTTTGGTTGCCTCCGGGCAGATAGTGCACGGGAGGTTGACGATTCGAATCCTCTAACAGGACCTGGCTTCTCACGAACTGTTTGTTGTAACCAACCTCATCTCCATGAGAGGAATCCGTTGAGATACTGCACGAATTACATATCCACGACAAAGTATAATGTTCTTTCTTTCTTGCCTAAGGCTCTCTTTGAGCAATTCCGAAGGGTTGCCAATGTCTACTTTCTTATGGCTGCATTGTTATCGCTCACACCGGTTGCCCCATTTTCTGCCATGAGCATGATTGCACCTTTGGTATTTGTTGTTGGGCTCAGTATGGCGAAAGAAGCTCTAGAGGACTGGCGTCGATTTGTGCAGGATATGAAGGTTAATCTCAGGAAAGTTTGTGTACATAAAGGGGAAGGTGTTTTTGGTTATAGACCATGGCACAAGATTCGAGTAGGAGATATACTGAAAGTGGAGAAGGATCAATTCTTTCCAGCCGATCTGCTTCTCTTGTCATCATGCTATGAGGACGGTATATGTTACGTCGAAACAATGAATTTGGATGGCGAGACTAATCTCAAAGTAAAGAGATCTTTGGAAGTAACCTTACCGTTGGATGATGATGCAACTTTCAAAGATTTTACTGGAAAAATTTACTGTGAAGATCCCAACCCGAATCTTTACACATTTGTAGGTAACTTTGAGTATGATCGACAGATTTATCCTCTTGATCCTAGTCAGATTCTCCTTAGAGATTCAAAATTGAGGAATACAGCATATGCCTATGGGGTGGTGATATTTACTGGACATGATAGCAAAGTCATGCAGAATGCTACAAAATCTCCTTCGAAAAGAAGTGGAATAGAGAGAAAAATGGACAAAATTATTTACATTCTTTTTACTCTCCTTATATTGATCTCATCATTCAGCTCAATAGGTTTTGCTGTGAAAACAAAGTACGAAATGACAGATTGGTGGTATTTACGAACTACTGGCGATGATCATGATCCATTGTACAACCCTCGTAAGCCGACCTTATCAGGGCTCATACATTTAATCACAGCTCTTATACTTTATGGATATTTGATACCCATCTCGTTATATGTTTCCATCGAGATAGTTAAGGTTCTGCAAGCTTCCTTCATTAACCAAGATATTAACATGTATTGTGAAGAGACTGGCAATCCAGCTCGAGCTCGAACGTCAAACTTAAATGAGGAGTTGGGTCAGGTGGACACAATCCTATCTGACAAAACAGGCACTTTGACTTGCAATCAGATGGACTTTCTGAAATGTTCCATTGCTGGCACTGCATATGGGGTTAAAGCTAGTGAGGTTGAACTTGCAGCTGCAAGGCAGATGGCATATGATCTTGAGGAGGATGGAGAATATTCTGATGTTTATGGGCAAAAGAATAGCCGACAGCCTTCTATGGCAAATAGCAGAAAAGGGTCCGAGATTGAATTGGAGACTGTCGTTACTTCGGGTGATGGCAAGGATCAGAAGTCTGCCATAAAGTATTTTAGTTTCGAGGACAGCCGCCTAACTGGCGGAAACTGGTTGAATGAGCCCAATCCTGATGTCATTCTATTATTCTTCCGAATTTTAGGAATTTGTCACACTGCGATTCCCGAGCTGAATGAGGAGACTGGTGTTTATACATACGAGGCAGAGTCCCCCGATGAAGGCGCTTTTCTTGTTGCAGCAAGAGAATTTGGTTTTGAATTTTGTAAGAGAACACAGTCAACCTTGGTTGTCCGTGAAAAATATCCTTCGCCTACCCAAATAGTTGAAAGGGAATACAAAATTTTGAATCTTTTGGATTTCACTAGCAAGAGAAAGAGAATGTCTGTAATTATTAGGGACGAGTTCGGCCAGATAATTCTTCTCTGCAAAGGTGCTGATAGCATCATCTTCGATCGACTAGCAAAGAACGGAAGAATGTATGAGGAAGCTACCACAAGGCATTTGAATGAATATGGAGAAGCAGGGTTGCGAACTCTGGCACTTGCTTATAGGAAGCTTGAGGAGTCCGAATATAATGCTTGGAACAATGAGTTTCAAAAGGCTAAGACATCCATTGGAGGAGATAGAGATGCAATGCTTGAGCGAGTATCCGACCTCATGGAGAGAGAATTAACCCTTGTTGGTGCTACTGCAGTGGAGGATAAGTTGCAGAATGGGGTCCCCCAATGCATAGACAAGCTTGCACAAGCTGGTCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACTGCCATCAACATAGGATATGCATGCAGTTTACTGCGACAGGGAATGAAGCGGATCTGCATATCGTCGAACTCGGATTCCTTAGCACAGGATGGCAAAGAGGCCATGAAAGCACATATTTTGAATCAAATCACCAACGCCTCACAAATGATCAATCTGGAAAATGATCCACATGCTGCATTTGCTTTAATCATTGATGGGAAGACTCTAACCTATGCTCTCGAGGACGATATGAAGCTCCATTTCCTCGGGCTTGCTGTTGATTGTGCGTCGGTCATTTGCTGTCGAGTCTCCCCTAGACAGAAGGCTCTGGACTTGCATTCTCATTTTAGGATTAACCATCTTGTATGCTATACTGTTCATATATCATATTTAAGCTGTTTATCAAATGGAAATCTGTTTGTTTCGACTTCGACCTCTTTGGGGGCGTTTCTACAGATAACAAGGTTAGTGAAAGAAGGTACTGGGAAAACCACTTTAGCAATTGGCGATGGTGCAAATGATGTAGGAATGATTCAAGAGGCCGATATCGGTGTCGGTATCAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGATTTCTCTATTGCTCAATTTCGATTTCTGGAAAGGCTTCTGGTAGTCCATGGCCATTGGTGCTACAAGAGGATAGCACAAATGATATGCTACTTCTTCTACAAGAATATTGCATTTGGATTAACGCTGTTCTACTTTGAAGCATATGCTGGATTTTCTGGGCAATCAATCTATGATGATTTCTACATGTTATCATTTAATGTCATACTCACCTCATTGCCTGTAATTTCCCTTGGAGTTTTTGAGCAAGATGTTTCTTCTGAGGTCTGCCTCCAGTTCCCTGCACTGTATCAGCAAGGACCCAGAAACTTGTTCTTCGACTGGCCTCGGATTTTCGGATGGATGGGGAACGCTCTCTACTCCTCTCTAGTTACATTCTTCCTCAACCTCATCATCTTCTACGATCAGGCATTCCGCTCAGGCGGCCAAACTGCCGATATGACTACAGTGGGAACGACCATGTTTACGTGCATCATATGGGCAGTAAATTGCCAGATTGCTCTCACAATGAGCCATTTCACCTGGATCCAACACCTTTTCGTGTGGGGTAGTATCGCAATGTGGTATTTGTTCATCTTACTCTATGGAATGGTTTTATCCTCTGGGAATGCCTATAAAATCTTTGTTGAAGCACTAAGTCCTGCCCCTGTTTACTGGATAGCCACCATTTTAGTAACAATTACCTGTAATCTCCCATATCTTGCCCACATATCCTTCCAGAGAAGCTTCCATCCATTGGATCATCAAATTATCCAAGAAATCAAATACTACAGAAAGGATGTTGAAGATTCACACATGTGGACCAGAGAAAGATCAAAGGCAAGGCAAAAGACAAAGATAGGATTCACAGCCAGAGTAGAAGCAAAGATCAGACAGCTGAAAGGAAAGCTGCAAAAGAAACATTCTTCCCTGGGCATGCCTCCTCCAAATGCTTCTGCTATATCATGA 3831 42.47 MKIESMRRGRIRERIRRSHLYTFGCLRADSAREVDDSNPLTGPGFSRTVCCNQPHLHERNPLRYCTNYISTTKYNVLSFLPKALFEQFRRVANVYFLMAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWRRFVQDMKVNLRKVCVHKGEGVFGYRPWHKIRVGDILKVEKDQFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLPLDDDATFKDFTGKIYCEDPNPNLYTFVGNFEYDRQIYPLDPSQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSGIERKMDKIIYILFTLLILISSFSSIGFAVKTKYEMTDWWYLRTTGDDHDPLYNPRKPTLSGLIHLITALILYGYLIPISLYVSIEIVKVLQASFINQDINMYCEETGNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVKASEVELAAARQMAYDLEEDGEYSDVYGQKNSRQPSMANSRKGSEIELETVVTSGDGKDQKSAIKYFSFEDSRLTGGNWLNEPNPDVILLFFRILGICHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCKRTQSTLVVREKYPSPTQIVEREYKILNLLDFTSKRKRMSVIIRDEFGQIILLCKGADSIIFDRLAKNGRMYEEATTRHLNEYGEAGLRTLALAYRKLEESEYNAWNNEFQKAKTSIGGDRDAMLERVSDLMERELTLVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISSNSDSLAQDGKEAMKAHILNQITNASQMINLENDPHAAFALIIDGKTLTYALEDDMKLHFLGLAVDCASVICCRVSPRQKALDLHSHFRINHLVCYTVHISYLSCLSNGNLFVSTSTSLGAFLQITRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAYAGFSGQSIYDDFYMLSFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWPRIFGWMGNALYSSLVTFFLNLIIFYDQAFRSGGQTADMTTVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSIAMWYLFILLYGMVLSSGNAYKIFVEALSPAPVYWIATILVTITCNLPYLAHISFQRSFHPLDHQIIQEIKYYRKDVEDSHMWTRERSKARQKTKIGFTARVEAKIRQLKGKLQKKHSSLGMPPPNASAIS 1276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6210955 6216124 - Carg09452-RA Car17g00671 165043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00671 1276 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 872 - -
Car17g00671 1276 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 915 1268 - -
Car17g00671 1276 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 64 871 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Car17g00671 1276 Pfam Phospholipid-translocating ATPase N-terminal 51 116 IPR032631 -
Car17g00671 1276 Gene3D - 124 297 - -
Car17g00671 1276 Pfam Phospholipid-translocating P-type ATPase C-terminal 958 1206 IPR032630 -
Car17g00671 1276 SUPERFAMILY Calcium ATPase, transduction domain A 151 294 IPR008250 -
Car17g00671 1276 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 531 695 IPR023299 GO:0000166
Car17g00671 1276 SUPERFAMILY Calcium ATPase, transmembrane domain M 59 1202 IPR023298 -
Car17g00671 1276 CDD P-type_ATPase_APLT_Dnf-like 67 1089 - -
Car17g00671 1276 SUPERFAMILY HAD-like 419 974 IPR036412 -
Car17g00671 1276 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 915 1268 - -
Car17g00671 1276 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 6 872 - -
Car17g00671 1276 ProSitePatterns E1-E2 ATPases phosphorylation site. 433 439 IPR018303 -
Car17g00671 1276 Pfam Cation transport ATPase (P-type) 555 658 - -
Car17g00671 1276 Gene3D - 733 970 IPR023214 -
Car17g00671 1276 Gene3D - 597 732 IPR023299 GO:0000166
Car17g00671 1276 MobiDBLite consensus disorder prediction 1255 1276 - -
Car17g00671 1276 PRINTS P-type cation-transporting ATPase superfamily signature 930 949 - -
Car17g00671 1276 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Car17g00671 1276 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 914 1011 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00671 Car-Chr17:6210955 Car18g00024 Car-Chr18:114729 0 dispersed
Car17g00671 Car-Chr17:6210955 Car08g00661 Car-Chr8:4250696 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00671 K01530 - csv:101221220 2288.84