Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00674 ATGGGCCCGCGTGTTTCTCATCTCATCGGGACTTCTCGAACATTCGTCCATCCAGGTCCTATCAAGGCATTGGCCCTCTCGTGCCCATGTCGTGTCATTTACAAATACCGTACTGGATACCAAGTGTATGTAGCAACCTCCAACACACGAGCTGGGATCTGTTTTTTGCTGTCTGATGTGGAAGAATTTTGGAATAATTTCAAACCACTGATAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGATTCAGATGATGATGAAAGGGAATTTTTTGTCTCAACAACAACAACAACATCAACACCAAGTTTTAATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCTAATCAGTATTTTGTTACTCAATCCCAACACCCACCGCCGCCGCCGCCGCCGCCTCCTCCTCCGAAGAAGAAACGCAACCTCCCCGGAAACCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAGAACACTAATGGCAACGAATCGATTCGTGTGCGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATCTACCATGGAAGCTGAAGCAAAGATCAAACAAAGAAGTGGTGAAGAAGAAGGTATATGTGTGCCCAGAGAGCAGCTGCGTCCACCATGACCCATCAAGAGCCCTTGGAGACCTCACAGGTATCAAAAAGCACTTCTACAGAAAGCATGGCGAAAAGAAGTGGAAATGCGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACACTGTTTTCAAGGAGAGACAGTTTTATAACACATAGAGCTTTCTGCGATGCATTGGCGGATGAAAGTGCGAGATCAGCTATGGCCTTAAACCCGCTAATTTCGTCTTATAATAATAATAATAATAATAATTTTGTTATTAAACGGGACTTTAGTAATGGTAACAATATGAGGGCGGAGATTCCACCGTGGCAACACTCGAATGATCTTCGAGGGGAAATTTTTATTGGGAGTTGTCAAGACGAGCATCCGCATCAGAATCATGAAACCCTAAACCCGAACGGGCACGGACACGGACACGGACACGGACACGGGTGCGGGGCGAGTATTGGACTTCCTCCTCCTTCTTCATATCAGTGTTCTTCGGTTTCTTCTCCTCATATTTCAGCCACTGCATTGCTGCAGAAGGCAGCTCAAATGGGTGCCACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCAAAGGCCCCACAAGATGGTTCACGTGTCTACAGGTGATTATGGGCAGATCGGAGGAGGGGCGGTGAGTTGTAGTAGTAGTTGTACCGATTACGGGCACAAAGCTGCGGCGGTTTCAGCTTCGGAACCCGCCACTTTTCTTCACGACATGATAAATTCCCTCTCTTCTGCTTCGGCTTCTCATCCCTTCCTACAAGATTCCTCCTTTAACGACGTCACCACGTTCCCCGCCATGCATCACCACATCGTCCCCGCTACTGCCACCACCACCGTCACCGCCGCTTCGGGCGGTCGAAGCGACGGTTTAACGAGGGATTTTTTGGGGCTTCGCCCTCTTTCCCATGGAGATATTCTAAGCCTTACTGGTTTTGGGAACTGCATTGTTCCTAATTCCTCCAATCTTCAGAGTCAAATCCAGAAGCCATGGCAGGGTTAG 1764 47.17 MGPRVSHLIGTSRTFVHPGPIKALALSCPCRVIYKYRTGYQVYVATSNTRAGICFLLSDVEEFWNNFKPLIEEEEEEEEEEEEEGIQMMMKGNFLSQQQQQHQHQVLMDENLSNLTSASGEATASVSSANQYFVTQSQHPPPPPPPPPPPKKKRNLPGNPDPDAEVIALSPRTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFYRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLISSYNNNNNNNFVIKRDFSNGNNMRAEIPPWQHSNDLRGEIFIGSCQDEHPHQNHETLNPNGHGHGHGHGHGCGASIGLPPPSSYQCSSVSSPHISATALLQKAAQMGATMSSTTTTSGSMQRPHKMVHVSTGDYGQIGGGAVSCSSSCTDYGHKAAAVSASEPATFLHDMINSLSSASASHPFLQDSSFNDVTTFPAMHHHIVPATATTTVTAASGGRSDGLTRDFLGLRPLSHGDILSLTGFGNCIVPNSSNLQSQIQKPWQG 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6243622 6250713 + Carg09455-RA Car17g00674 165046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00674 587 Coils Coil 71 91 - -
Car17g00674 587 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 202 IPR013087 -
Car17g00674 587 MobiDBLite consensus disorder prediction 134 165 - -
Car17g00674 587 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Car17g00674 587 MobiDBLite consensus disorder prediction 137 155 - -
Car17g00674 587 Pfam Zinc finger, C2H2 type 180 202 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00148 Car-Chr9:719274 Car17g00674 Car-Chr17:6243622 5.54E-90 dispersed
Car16g00684 Car-Chr16:4345668 Car17g00674 Car-Chr17:6243622 3.05E-94 dispersed
Car17g00674 Car-Chr17:6243622 Car08g00290 Car-Chr8:1858058 1.10E-104 dispersed
Car01g00047 Car-Chr1:267199 Car17g00674 Car-Chr17:6243622 1.95E-07 wgd
Car17g00674 Car-Chr17:6243622 Car08g00656 Car-Chr8:4225430 3.57E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5062 PF00096 zf-C2H2 0.0061 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00674 K25870 - csv:101220200 652.514