Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00676 ATGAGCCCCATCACTCACCACAACCACCCCCACCACCACCATCACCACCACCACCAACTATCCAAACCCGCCCCCACCGCCGCCTCAACCCTCGCCTCCGCCACCACTCAAGCCTGCGCCGCCTGTAAGTACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTCGCCCCCTATTTCCCTCACGATCGCCAACGCCAATTCCTCAACGCTCATAAACTCTTCGGCGTTAGTAACATCACCAAAATCATCAAAAACCTTGATCCATTCGAGAAGGAAGAGGCAATGCGCACCATTATTTTTCAATCCGATGTCCGATCCATGGATCCCGTTGGTGGCTGCTATCGCATCATTCGCGACCTCCAACTCCAGATCGAATACATCAAAACCGAGCTCGATTTCGTTCTCAGTCAATTGGCGCTTTGTAAGCAGCAGGCCGCCGCCGCTGCCGCCGTCGCCATTCTCGAGGCGGATCCGATGAGTGGATACGGAGGACTTGAGCATCAATTTGTGGAGGGATATGGAGGGGAAGGGTTCGTAGTCGGGGAAAACGAGAATCGGGAGACTCTGGAAGATCAAGAAGTCGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCCCTGCAATTGAAACCGGCCGGCTCTGTTCAAGATTTCCATGATATCAAGATCGATACCAACAATACGAATCACCATCATCACCATCAACAACAACAACAACAACAACAACAACAACATCTTCTCAGGTTTCAACAGGATCATCATGATCATCATGATCTGGTTCATCACAGTGAAGAAGCTATGCTGAAGATGGACAATGTGATGTTAAAAGAGTCTGACCCAATACAACAGGCTCAAGATCAAGAGCTTAAAGGTGCAGTTGACACTTTATTTACCTTCCCAACTTGCGATCCTTAG 912 49.89 MSPITHHNHPHHHHHHHHQLSKPAPTAASTLASATTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSMDPVGGCYRIIRDLQLQIEYIKTELDFVLSQLALCKQQAAAAAAVAILEADPMSGYGGLEHQFVEGYGGEGFVVGENENRETLEDQEVEVWGIQDSCSSLQLKPAGSVQDFHDIKIDTNNTNHHHHHQQQQQQQQQQHLLRFQQDHHDHHDLVHHSEEAMLKMDNVMLKESDPIQQAQDQELKGAVDTLFTFPTCDP 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6257370 6259716 + Carg09457-RA Car17g00676 165048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00676 303 MobiDBLite consensus disorder prediction 1 27 - -
Car17g00676 303 MobiDBLite consensus disorder prediction 223 246 - -
Car17g00676 303 MobiDBLite consensus disorder prediction 231 246 - -
Car17g00676 303 Pfam Lateral organ boundaries (LOB) domain 38 133 IPR004883 -
Car17g00676 303 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Car17g00676 303 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02643 Car-Chr4:20589289 Car17g00676 Car-Chr17:6257370 4.74E-34 dispersed
Car05g00079 Car-Chr5:411648 Car17g00676 Car-Chr17:6257370 1.25E-32 dispersed
Car15g00283 Car-Chr15:1535046 Car17g00676 Car-Chr17:6257370 6.38E-33 dispersed
Car17g00676 Car-Chr17:6257370 Car05g00698 Car-Chr5:4724611 8.97E-30 dispersed
Car17g00676 Car-Chr17:6257370 Car08g00654 Car-Chr8:4216033 2.37E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5063 PF03195 LOB 4.80E-35 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00676 - - cmos:111456336 473.011