Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car17g00676 | ATGAGCCCCATCACTCACCACAACCACCCCCACCACCACCATCACCACCACCACCAACTATCCAAACCCGCCCCCACCGCCGCCTCAACCCTCGCCTCCGCCACCACTCAAGCCTGCGCCGCCTGTAAGTACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTCGCCCCCTATTTCCCTCACGATCGCCAACGCCAATTCCTCAACGCTCATAAACTCTTCGGCGTTAGTAACATCACCAAAATCATCAAAAACCTTGATCCATTCGAGAAGGAAGAGGCAATGCGCACCATTATTTTTCAATCCGATGTCCGATCCATGGATCCCGTTGGTGGCTGCTATCGCATCATTCGCGACCTCCAACTCCAGATCGAATACATCAAAACCGAGCTCGATTTCGTTCTCAGTCAATTGGCGCTTTGTAAGCAGCAGGCCGCCGCCGCTGCCGCCGTCGCCATTCTCGAGGCGGATCCGATGAGTGGATACGGAGGACTTGAGCATCAATTTGTGGAGGGATATGGAGGGGAAGGGTTCGTAGTCGGGGAAAACGAGAATCGGGAGACTCTGGAAGATCAAGAAGTCGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCCCTGCAATTGAAACCGGCCGGCTCTGTTCAAGATTTCCATGATATCAAGATCGATACCAACAATACGAATCACCATCATCACCATCAACAACAACAACAACAACAACAACAACAACATCTTCTCAGGTTTCAACAGGATCATCATGATCATCATGATCTGGTTCATCACAGTGAAGAAGCTATGCTGAAGATGGACAATGTGATGTTAAAAGAGTCTGACCCAATACAACAGGCTCAAGATCAAGAGCTTAAAGGTGCAGTTGACACTTTATTTACCTTCCCAACTTGCGATCCTTAG | 912 | 49.89 | MSPITHHNHPHHHHHHHHQLSKPAPTAASTLASATTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSMDPVGGCYRIIRDLQLQIEYIKTELDFVLSQLALCKQQAAAAAAVAILEADPMSGYGGLEHQFVEGYGGEGFVVGENENRETLEDQEVEVWGIQDSCSSLQLKPAGSVQDFHDIKIDTNNTNHHHHHQQQQQQQQQQHLLRFQQDHHDHHDLVHHSEEAMLKMDNVMLKESDPIQQAQDQELKGAVDTLFTFPTCDP | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 6257370 | 6259716 | + | Carg09457-RA | Car17g00676 | 165048 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car17g00676 | 303 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Car17g00676 | 303 | MobiDBLite | consensus disorder prediction | 223 | 246 | - | - | |
Car17g00676 | 303 | MobiDBLite | consensus disorder prediction | 231 | 246 | - | - | |
Car17g00676 | 303 | Pfam | Lateral organ boundaries (LOB) domain | 38 | 133 | IPR004883 | - | |
Car17g00676 | 303 | ProSiteProfiles | LOB domain profile. | 37 | 138 | IPR004883 | - | |
Car17g00676 | 303 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g02643 | Car-Chr4:20589289 | Car17g00676 | Car-Chr17:6257370 | 4.74E-34 | dispersed | |
Car05g00079 | Car-Chr5:411648 | Car17g00676 | Car-Chr17:6257370 | 1.25E-32 | dispersed | |
Car15g00283 | Car-Chr15:1535046 | Car17g00676 | Car-Chr17:6257370 | 6.38E-33 | dispersed | |
Car17g00676 | Car-Chr17:6257370 | Car05g00698 | Car-Chr5:4724611 | 8.97E-30 | dispersed | |
Car17g00676 | Car-Chr17:6257370 | Car08g00654 | Car-Chr8:4216033 | 2.37E-99 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5063 | PF03195 | LOB | 4.80E-35 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car17g00676 | - | - | cmos:111456336 | 473.011 |