Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00699 ATGGATCATTTGAGTTGGGATGGATATGGATCAAGAGCTACAACGAACACGCCACCGCCGCCGTCGTCATCGTTTTGGAGCAATTACCAACAAGGACATGAACAAAGATTCATGATATCAAATAATTCAAATTCTCCCAACTTCTTCAACTCAGTTCAAGATCTCCCAACTAGCAACATGGATGTTGTTGGACTTGAAACACAGCTCCTCACAAGCTTCAACGGCGATAAAACAGCAACGGCGACATGCTCTCTCGAGTCGTTGGACTGCTTACTTTCGGCTACAAACAGCAACACAGACACATCAATTGAAGATGATGGATCAGTATCAATGATGCTATCAGATTACACAAATTTATGGAACTTTGGAGGCAATGCTGCACCATCTTCAAAGAGAAGCCATGATCAAACTCATATCAAACCAACAGAGTACTCTGTTTTCTCAAACAACATCATAACTTTATCTGATTCAACTTCAAACAGCGAAGGTTTCAAGATCATAACAGATCAAAATCTGCCAAAACAAAAGAAACCCAGATCAGAAAAGCCACCAAATTCATCAAACATCAACTTTCAACAATCATGTTCATCAGGATCATCATGTATTGATCAAGAACCTGACCCAGAAGCCATAGCACAAATGAAGGAGATGATATACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTAGAAGCCATAGAAAAGCCCAAAAGGAAGAACGTGAGGATTTCAACAGACCCACAAACAGTTGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAAAGAATAAGAGTTTTACAAAGGATTGTTCCTGGTGGAAGCAAAATGGATACAGCATCAATGCTTGATGAAGCAGCAAATTATCTGAAGTTCTTGAAGTCTCAGATCAAAGCATTGGAAAATCTTGGGCAAAAGATTGAATCTTTGAATTGCCCATCAAATACCATAGCTTTCTCTTTTAACCCATCTTTTCCCATACAAACTTCTTCATCATCTTCCTCCCATAATAATTTCTCACTCCAAAATCCTTATGATCAACTGATGTAG 1050 39.81 MDHLSWDGYGSRATTNTPPPPSSSFWSNYQQGHEQRFMISNNSNSPNFFNSVQDLPTSNMDVVGLETQLLTSFNGDKTATATCSLESLDCLLSATNSNTDTSIEDDGSVSMMLSDYTNLWNFGGNAAPSSKRSHDQTHIKPTEYSVFSNNIITLSDSTSNSEGFKIITDQNLPKQKKPRSEKPPNSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEAIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRIVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKIESLNCPSNTIAFSFNPSFPIQTSSSSSSHNNFSLQNPYDQLM 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6399517 6400566 + Carg09481-RA Car17g00699 165071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00699 349 MobiDBLite consensus disorder prediction 168 205 - -
Car17g00699 349 MobiDBLite consensus disorder prediction 9 23 - -
Car17g00699 349 MobiDBLite consensus disorder prediction 182 203 - -
Car17g00699 349 Coils Coil 283 310 - -
Car17g00699 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 244 293 IPR011598 GO:0046983
Car17g00699 349 MobiDBLite consensus disorder prediction 328 349 - -
Car17g00699 349 Pfam Helix-loop-helix DNA-binding domain 254 293 IPR011598 GO:0046983
Car17g00699 349 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01018 Car-Chr9:6823919 Car17g00699 Car-Chr17:6399517 2.08E-31 dispersed
Car17g00699 Car-Chr17:6399517 Car09g00239 Car-Chr9:1316589 5.19E-17 dispersed
Car17g00699 Car-Chr17:6399517 Car08g00634 Car-Chr8:4088823 1.24E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5064 PF00010 HLH 7.60E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00699 - - cmos:111455909 664.455