Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00703 ATGTCGTGGCAAACGTATGTCGACGATCACCTTATGTGTGAGATTGAAGGCAACCATCTCACCTCTGCCGCTATCATCGGACACGACGGTAGTGTTTGGGCGCAGAGCGCCTCATTCCCTCAGTTTAAGCCGGAGGAGATTTCAGCGATTATGAAGGATTTTGATGAGCCTGGTTCTCTTGCCCCAACTGGTTTACACCTTGGTGGCACCAAGTACATGGTTATCCAGGGAGAGCCAGGAGCTGTTGTTCGTGGTAAAAAGGGCGCTGGCGGAGTTACTGTGAAGAAAACTGAGAAAGCCATGATTGTTGGAATCTATGATGAACCTGTAACTCCAGGACAATGCAATATGGTTGTTGAAAGGTTGGGAGATTACCTGATCGAACAGGGTTTGTAA 396 48.23 MSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSASFPQFKPEEISAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVVRGKKGAGGVTVKKTEKAMIVGIYDEPVTPGQCNMVVERLGDYLIEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6453074 6454479 + Carg09485-RA Car17g00703 165075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00703 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Car17g00703 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Car17g00703 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Car17g00703 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Car17g00703 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Car17g00703 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Car17g00703 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Car17g00703 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Car17g00703 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Car17g00703 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Car17g00703 131 SMART prof_2 1 131 IPR005455 GO:0003779
Car17g00703 131 CDD PROF 2 130 IPR005455 GO:0003779
Car17g00703 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Car17g00703 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Car17g00703 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Car17g00703 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Car17g00703 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Car17g00703 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Car17g00703 131 PANTHER PROFILIN 1 131 - -
Car17g00703 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Car17g00703 131 Pfam Profilin 1 130 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car14g01139 Car17g00703 CCT
Car01g00075 Car17g00703 CCT
Car01g00075 Car17g00703 ECH
Car14g01139 Car17g00703 ECH
Car08g00630 Car17g00703 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01245 Car-Chr12:11761833 Car17g00703 Car-Chr17:6453074 3.94E-76 dispersed
Car01g00075 Car-Chr1:421448 Car17g00703 Car-Chr17:6453074 4.38E-76 wgd
Car14g01139 Car-Chr14:10038186 Car17g00703 Car-Chr17:6453074 1.38E-77 wgd
Car17g00703 Car-Chr17:6453074 Car08g00630 Car-Chr8:4036191 2.15E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00703 K05759 - pop:7475105 246.514