Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g00704 | ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTACTAGGGATCAAGAAAGAGAAGGACCCATCTGGGAATTTGAATTCAAATTCAACGGCGGTTGTTGGTGACAAAAAGGAAAAGAAACGGTGGAGTTTTGCGAAGTCCGGTAGAGATTCCGGCCAAATACAGCCTCCGGTGGAGACGACTTGGTTTAGATCCTACATTTCCGATTCAGAGAAAGAGCAGAATAGGCACGCAATTGCGGTGGCTGCTGCTACCGCCGCTGCAGCTGACGCTGCTGTGGCAGCGGCTCAGGCGGCGGTGGCAGTCGTCCGGCTGACAAGCCAAGGCAGAGGGTCTGTGTCTGTCACCGGAAGAGATAGATGGGCGGCGGTGAAGATTCAAACAGTTTTTAGAGGCTATTTGGCTAGAAAGGCGCTTCGAGCTCTCAAAGGGCTCGTTAAATTGCAGGCTGTGGTTAGAGGATTTCTCGTACGAAAACGAGCCGCTGCAACTCTTCACAGTATGCAAGTTCTTTTTAGAGCTCAAACTGCAATTAGGACACAAAGAGCTCGTCGATCTTTCAACAAAGAGAATCGGTTTATCCCCGAGATTCGACCCCGAAAATCTGCAGAACGGTTCGATGAAACAAGGAGTGAATTCCATAGCAAGAGATTATCGGAAACACCCTCCATGAATTCAATGGACGAGAGCCCAAAAATCGTGGAAATCGACACCTACCGAACTCGATCATCGAGGTCACGTCGATACATATCCGCATTCTCCGAATGCGGAGGAGACGACGTAGCTATCTCATCTTCACCATTACCATGTTTGAATCGAGCTCGCATCATCGATTGCCACAACAACATGGTTCAAGACTTCGAATGGTGTTTGATGGGCGAAGACTGCAAGTTTCCTACAGCACATAGCACGCCGCGACTATCGAACAATTCATTTGCCTCGACCAACATGCCGGTCACGCCATCGAAGAGCGTGTGCGGGGACAGCTTCTTTAGGCCATACATGAACTACTACCCGAATTACATGGCGAACACGCAATCGTTCAAGGCGAAATTGAGGTCACAAAGTGCACCAAAGCAAAGGCCAGAGCCTGGGTCAAAGAAGAAGCTGTCATTGAATGAAGTAATGGCAGCAAGGAACAGCTTAAGCAGTGTAAGAATGCAGAGACCAAGCAACCAAATGGTGCAAATGGTTGAAGAAGAAGAAGAACAACAACAAATTATGGGGTTTGAGTGA | 1233 | 48.58 | MGKATRWLKGLLGIKKEKDPSGNLNSNSTAVVGDKKEKKRWSFAKSGRDSGQIQPPVETTWFRSYISDSEKEQNRHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSVSVTGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQVLFRAQTAIRTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSETPSMNSMDESPKIVEIDTYRTRSSRSRRYISAFSECGGDDVAISSSPLPCLNRARIIDCHNNMVQDFEWCLMGEDCKFPTAHSTPRLSNNSFASTNMPVTPSKSVCGDSFFRPYMNYYPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEVMAARNSLSSVRMQRPSNQMVQMVEEEEEQQQIMGFE | 410 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 6456875 | 6458286 | - | Carg09486-RA | Car17g00704 | 165076 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g00704 | 410 | MobiDBLite | consensus disorder prediction | 384 | 399 | - | - | |
| Car17g00704 | 410 | MobiDBLite | consensus disorder prediction | 201 | 216 | - | - | |
| Car17g00704 | 410 | MobiDBLite | consensus disorder prediction | 201 | 227 | - | - | |
| Car17g00704 | 410 | MobiDBLite | consensus disorder prediction | 384 | 410 | - | - | |
| Car17g00704 | 410 | ProSiteProfiles | IQ motif profile. | 142 | 168 | IPR000048 | GO:0005515 | |
| Car17g00704 | 410 | MobiDBLite | consensus disorder prediction | 17 | 37 | - | - | |
| Car17g00704 | 410 | MobiDBLite | consensus disorder prediction | 349 | 369 | - | - | |
| Car17g00704 | 410 | Pfam | Protein of unknown function (DUF4005) | 303 | 390 | IPR025064 | - | |
| Car17g00704 | 410 | ProSiteProfiles | IQ motif profile. | 118 | 146 | IPR000048 | GO:0005515 | |
| Car17g00704 | 410 | Pfam | IQ calmodulin-binding motif | 145 | 159 | IPR000048 | GO:0005515 | |
| Car17g00704 | 410 | Pfam | IQ calmodulin-binding motif | 119 | 139 | IPR000048 | GO:0005515 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car14g01140 | Car17g00704 | CCT | |
| Car01g00077 | Car17g00704 | CCT | |
| Car14g01140 | Car17g00704 | ECH | |
| Car01g00077 | Car17g00704 | ECH | |
| Car08g00629 | Car17g00704 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car08g00629 | Car-Chr8:4031350 | Car17g00704 | Car-Chr17:6456875 | 0 | dispersed | |
| Car14g01570 | Car-Chr14:12821341 | Car17g00704 | Car-Chr17:6456875 | 1.89E-42 | dispersed | |
| Car17g00704 | Car-Chr17:6456875 | Car17g00192 | Car-Chr17:1156660 | 4.78E-28 | dispersed | |
| Car01g00077 | Car-Chr1:426983 | Car17g00704 | Car-Chr17:6456875 | 6.26E-74 | wgd | |
| Car10g00607 | Car-Chr10:3093336 | Car17g00704 | Car-Chr17:6456875 | 8.03E-107 | wgd | |
| Car11g00535 | Car-Chr11:2896851 | Car17g00704 | Car-Chr17:6456875 | 1.14E-114 | wgd | |
| Car14g01140 | Car-Chr14:10044241 | Car17g00704 | Car-Chr17:6456875 | 1.27E-92 | wgd | |
| Car17g00704 | Car-Chr17:6456875 | Car08g00628 | Car-Chr8:4029391 | 7.13E-06 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g00704 | - | - | cmo:103500774 | 567.385 |