Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00704 ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTACTAGGGATCAAGAAAGAGAAGGACCCATCTGGGAATTTGAATTCAAATTCAACGGCGGTTGTTGGTGACAAAAAGGAAAAGAAACGGTGGAGTTTTGCGAAGTCCGGTAGAGATTCCGGCCAAATACAGCCTCCGGTGGAGACGACTTGGTTTAGATCCTACATTTCCGATTCAGAGAAAGAGCAGAATAGGCACGCAATTGCGGTGGCTGCTGCTACCGCCGCTGCAGCTGACGCTGCTGTGGCAGCGGCTCAGGCGGCGGTGGCAGTCGTCCGGCTGACAAGCCAAGGCAGAGGGTCTGTGTCTGTCACCGGAAGAGATAGATGGGCGGCGGTGAAGATTCAAACAGTTTTTAGAGGCTATTTGGCTAGAAAGGCGCTTCGAGCTCTCAAAGGGCTCGTTAAATTGCAGGCTGTGGTTAGAGGATTTCTCGTACGAAAACGAGCCGCTGCAACTCTTCACAGTATGCAAGTTCTTTTTAGAGCTCAAACTGCAATTAGGACACAAAGAGCTCGTCGATCTTTCAACAAAGAGAATCGGTTTATCCCCGAGATTCGACCCCGAAAATCTGCAGAACGGTTCGATGAAACAAGGAGTGAATTCCATAGCAAGAGATTATCGGAAACACCCTCCATGAATTCAATGGACGAGAGCCCAAAAATCGTGGAAATCGACACCTACCGAACTCGATCATCGAGGTCACGTCGATACATATCCGCATTCTCCGAATGCGGAGGAGACGACGTAGCTATCTCATCTTCACCATTACCATGTTTGAATCGAGCTCGCATCATCGATTGCCACAACAACATGGTTCAAGACTTCGAATGGTGTTTGATGGGCGAAGACTGCAAGTTTCCTACAGCACATAGCACGCCGCGACTATCGAACAATTCATTTGCCTCGACCAACATGCCGGTCACGCCATCGAAGAGCGTGTGCGGGGACAGCTTCTTTAGGCCATACATGAACTACTACCCGAATTACATGGCGAACACGCAATCGTTCAAGGCGAAATTGAGGTCACAAAGTGCACCAAAGCAAAGGCCAGAGCCTGGGTCAAAGAAGAAGCTGTCATTGAATGAAGTAATGGCAGCAAGGAACAGCTTAAGCAGTGTAAGAATGCAGAGACCAAGCAACCAAATGGTGCAAATGGTTGAAGAAGAAGAAGAACAACAACAAATTATGGGGTTTGAGTGA 1233 48.58 MGKATRWLKGLLGIKKEKDPSGNLNSNSTAVVGDKKEKKRWSFAKSGRDSGQIQPPVETTWFRSYISDSEKEQNRHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSVSVTGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQVLFRAQTAIRTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSETPSMNSMDESPKIVEIDTYRTRSSRSRRYISAFSECGGDDVAISSSPLPCLNRARIIDCHNNMVQDFEWCLMGEDCKFPTAHSTPRLSNNSFASTNMPVTPSKSVCGDSFFRPYMNYYPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEVMAARNSLSSVRMQRPSNQMVQMVEEEEEQQQIMGFE 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6456875 6458286 - Carg09486-RA Car17g00704 165076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00704 410 MobiDBLite consensus disorder prediction 384 399 - -
Car17g00704 410 MobiDBLite consensus disorder prediction 201 216 - -
Car17g00704 410 MobiDBLite consensus disorder prediction 201 227 - -
Car17g00704 410 MobiDBLite consensus disorder prediction 384 410 - -
Car17g00704 410 ProSiteProfiles IQ motif profile. 142 168 IPR000048 GO:0005515
Car17g00704 410 MobiDBLite consensus disorder prediction 17 37 - -
Car17g00704 410 MobiDBLite consensus disorder prediction 349 369 - -
Car17g00704 410 Pfam Protein of unknown function (DUF4005) 303 390 IPR025064 -
Car17g00704 410 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Car17g00704 410 Pfam IQ calmodulin-binding motif 145 159 IPR000048 GO:0005515
Car17g00704 410 Pfam IQ calmodulin-binding motif 119 139 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00704 - - - cmo:103500774 567.385
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car14g01140 Car17g00704 CCT
Car01g00077 Car17g00704 CCT
Car14g01140 Car17g00704 ECH
Car01g00077 Car17g00704 ECH
Car08g00629 Car17g00704 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00629 Car-Chr8:4031350 Car17g00704 Car-Chr17:6456875 0 dispersed
Car14g01570 Car-Chr14:12821341 Car17g00704 Car-Chr17:6456875 1.89E-42 dispersed
Car17g00704 Car-Chr17:6456875 Car17g00192 Car-Chr17:1156660 4.78E-28 dispersed
Car01g00077 Car-Chr1:426983 Car17g00704 Car-Chr17:6456875 6.26E-74 wgd
Car10g00607 Car-Chr10:3093336 Car17g00704 Car-Chr17:6456875 8.03E-107 wgd
Car11g00535 Car-Chr11:2896851 Car17g00704 Car-Chr17:6456875 1.14E-114 wgd
Car14g01140 Car-Chr14:10044241 Car17g00704 Car-Chr17:6456875 1.27E-92 wgd
Car17g00704 Car-Chr17:6456875 Car08g00628 Car-Chr8:4029391 7.13E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g268 Blo05g00074 Blo06g00714 . . Bpe06g00755 Bpe10g00674 . Bma13g01244 Cmo08g00706 Cmo17g00728 Cma01g00093 Cma14g01288 Car01g00077 Car14g01140 . Cpe12g00644 Cpe17g00525 . . . . . . . Cla07g01269 Cam07g1230 Cec07g1451 Cco07g1412 Clacu07g1334 Cmu07g1313 Cre07g1696 Cone20ag1278 Cone17ag0129 Cone16ag0724 Cone2ag0310 Lsi02g02822 Csa07g02270 Chy04g00953 Cme01g02724 . Blo10g00997 . . . Bpe09g00007 . Bma15g00349 . Cmo01g00094 Cmo14g01322 Cma08g00741 Cma17g00759 Car08g00629 Car17g00704 Cpe02g01697 Cpe03g01092 Bhi09g00470 . . . . . . Cla09g00021 Cam09g0023 Cec09g0022 Cco09g0024 Clacu09g0028 . Cre09g0022 Lsi07g00528 Csa03g02352 Chy01g02095 Cme04g01144
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car06g00308 CCT,ECH 9 187 IQD Protein Family AT3G09710 57.5 3.0e-50 196.8
Car04g01432 CCT,CST,ECH 84 236 IQD Protein Family AT3G09710 53.9 3.7e-40 163.3
Car04g02506 CCT,CST,ECH 1 282 IQD Protein Family AT5G03040 52.6 2.5e-65 246.9
Car06g00308 CCT,ECH 3 187 IQD Protein Family AT5G03040 63.8 8.6e-58 221.9
Car15g00406 CCT,CST,ECH 1 467 IQD Protein Family AT3G52290 53.0 5.5e-99 358.6
Car04g02506 CCT,CST,ECH 1 285 IQD Protein Family AT3G52290 66.7 6.5e-84 308.5
Car06g00308 CCT,ECH 8 187 IQD Protein Family AT3G52290 55.6 2.9e-47 186.8
Car03g01126 CCT,CST,ECH 95 284 IQD Protein Family AT2G26410 50.3 5.6e-37 152.9
Car11g00811 . 1 412 IQD Protein Family AT3G22190 57.2 1.2e-95 347.4
Car10g00782 . 23 333 IQD Protein Family AT3G22190 50.1 8.1e-63 238.4
Car01g01342 . 1 434 IQD Protein Family AT2G26180 59.7 4.0e-115 412.1
Car09g00291 . 1 438 IQD Protein Family AT2G26180 58.4 8.4e-113 404.4
Car16g00380 . 40 223 IQD Protein Family AT2G33990 52.9 2.1e-48 189.9
Car16g00380 . 43 216 IQD Protein Family AT3G15050 61.6 1.6e-53 206.8
Car06g00798 . 1 500 IQD Protein Family AT4G00820 55.7 3.5e-127 452.6
Car06g00798 . 1 500 IQD Protein Family AT1G01110 52.4 1.8e-123 440.3
Car08g00629 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.6 9.4e-74 274.6
Car10g00607 CST 1 376 IQD Protein Family AT3G16490 52.8 2.7e-68 256.5
Car11g00535 CST 1 382 IQD Protein Family AT3G16490 51.4 4.5e-68 255.8
Car17g00704 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 50.5 2.3e-67 253.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00704 Car_Chr17 FPKM 3.102741 3.252323 4.804886 5.232101 5.291783 5.229665 5.852217 7.898871 6.45666 6.61094