Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00717 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAATGGCAAATATGTTCGGTACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTCTATCATGAATGTCCAAAACCCAGTTCCATTCGTCGTCAGCAGCTTATCAGGGAGTGTCCCATTCTCTCTAATATCGAGCCTAAGCAAATCAAAGTCTGGTTTCAAAATAGAAGATGTCGTGAAAAACAGAGGAAAGAGGCTTCTCGGCTACAAGCTGTGAACAGGAAGCTTACGGCCATGAATAAGCTTTTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCGCAGCTGGTGTATGAAAATGGCTATTTCCGCCAGCATACTCAAAATACGACGCTTGGAGCTAAAGATACAAGTTGTGAACCGGTGGTAACAAGCGGTCAACACAATTTGGCATCTCAGCATCCGCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTAGCTGCACGTGCCTGCGGCCTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCATCGTGGTTTCGCGATTGCCGAGCTGTGGATGTCCTAAATGTGCTGCCAACAGCCAATGGTGGAACCATTGAGTTGCTTTATATGCAGCTCTATGCGCCTACAACATTGGCGCCTGCTCGGGACTTCTGGTTGTTGCGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATCTGTGAGAGATCACTCAAGAACACTCAGAATGGTCCAACCATGCCTCCAGTGCAGCATTTTGTCAGAGCCGAGATGTTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGTGGTTCGATCATTCATATCGTTGATCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTATTGCGTCCATTGTATGAATCAAGCACTGTTCTTGCTCAAAAGATGACGATGGCGGCTCTACGCCAGTTGAGGCAGATAGCTCATGAAGTTTCACAGTCAAATGGAACTGGCTGGAGTAGACGCCCTGCAGCCCTACGTTCACTTGGTCAAAGGCTCACCCGGGGGTTTAACGAAGCACTTAACGGGTTCAACGATGAAGGATGGTCCGTGATGGGAAATGATGGCATGGATGATGTAACTATTCTCGTAAACTCATCTCCTGACAAGCTAATGGGATTGAACATTTCATTCGCAAACGGATTTTCTGCCATCAGTAATGCAGTTTTATGTGCTAGAGCGTCGATGCTATTGCAGAATGTGCCTCCTGCAATTCTACTGAGGTTTCTGCGGGAGCACCGGTCCGAATGGGCAGACAACAATATCGATGCTTATTCAGCTGCTGCTGTTAAGGTTGGTCCATGGAGCTTACCAGGGTCCAGAGTTGGAAGTTTTGGGAATCAAGTAATACTTCCTCTGGCTCATACCATCGAGCACGAAGAGTTTCTCGAAGTGATTAAACTGGAAGGCATTGGCCATACTCCTGAAGAGGCAATGATGCCTAGAGAAATGTTTCTTCTGCAACTCTGCAGTGGAATGGATGAAAACGCTATAGGCACTTGTGCTGAGTTAATCTTTGCTCCAATTGATGCCTCGTTTGCCGACGATGCGCCTCTTTTACCCTCAGGGTTTCGGATCATACCACTTGATTCTGGAAAGGTGGGTGTAATTAAATCATGGTTTTGGATTATTCCTTCTCTTGGATGGAATTTGAGCTCTCTCTTCTATTATTTTGATATTATTGAGCAAATGTTTCAGGAAGCATCCAGCCCGAATCGCACACTCGATCTTGCTTCTGCTCTTGAAATTGGTCCTGCTGGAAATAGAGCACCAAATGACTCTGTAAATTCTGGGTGTTCAAGGTCTGTAATGACGATTGCGTTTGAATTTGCATTTGAGAGCCATATGCAAGAACATGTGGCATCGATGGCTCGACAATATGTTCGTAGTATTATATCATCGGTCCAGAGGGTTGCATTAGCTCTCTCACCTTCTCATTTAAGTTCACACGGCGGACTACGATCTCCACTTGGCACTCCTGAAGCACAGACGCTCGCTCGTTGGATCTGCAACAGTTATAGGTGCTACTTGGGGGTGGAGCTATTAAAATCTGGAATAGAAGGAGGGGAGCTTGTCCTGAAAACATTGTGGCATCATTCAGATGCAATCATGTGCTGCTCTCTAAAGGCATTGCCAGTGTTCACTTTCGCCAATCAGGCAGGCCTCGACATGCTCGAGACAACCTTAGTCGCACTTCAAGACATAACTTTAGAAAAGATATTCGACGACCATGGAAAAAAGACTCTCTGCTCAGAATTTCCACAGATAATGCAACAGGGATTTGCTTGTCTTCAAGGAGGCATATGCCTATCGAGCATGGGCCGACCTGTTTCGTATGAACGAGCCGTAGCTTGGAAGGTGCTAAACGAAGAGGAAAATGCACACTGCATCTGCTTTATGTTTGTGAACTGGTCCTTTGTCTGA 2613 46.69 MAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLGAKDTSCEPVVTSGQHNLASQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNGTGWSRRPAALRSLGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSAISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLAHTIEHEEFLEVIKLEGIGHTPEEAMMPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKVGVIKSWFWIIPSLGWNLSSLFYYFDIIEQMFQEASSPNRTLDLASALEIGPAGNRAPNDSVNSGCSRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHGGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGIEGGELVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFV 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6541955 6547404 - Carg09499-RA Car17g00717 165089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00717 870 Pfam START domain 161 369 IPR002913 GO:0008289
Car17g00717 870 Pfam MEKHLA domain 727 869 IPR013978 -
Car17g00717 870 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Car17g00717 870 Coils Coil 72 113 - -
Car17g00717 870 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Car17g00717 870 ProSiteProfiles START domain profile. 151 366 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00617 Car17g00717 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00558 Car-Chr9:3161431 Car17g00717 Car-Chr17:6541955 0 dispersed
Car12g00733 Car-Chr12:6939343 Car17g00717 Car-Chr17:6541955 0 dispersed
Car13g00384 Car-Chr13:6380963 Car17g00717 Car-Chr17:6541955 1.29E-53 dispersed
Car13g00385 Car-Chr13:6386083 Car17g00717 Car-Chr17:6541955 7.81E-60 dispersed
Car17g00717 Car-Chr17:6541955 Car20g00428 Car-Chr20:2406650 0 dispersed
Car17g00717 Car-Chr17:6541955 Car08g00617 Car-Chr8:3969220 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5066 PF01852 START 3.00E-54 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00717 K09338 - csv:101213106 1649.41