Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00796 ATTAAGAACTGTTTGTTTCCTGGTTTAAGCAATCAAAGAGACTCCATGTTAGGTGATGACCAGAAAATTGGTTGTTCTTCCCAAGAACAGCCACTCTGTTCTGGGAATTTGATGATGTTCATGAAGAATCAGGACCCTTCTTGCAGAGATTATTCAGAGGTTTTTTCTGGGGTTTCTTCAAACTATGTTGAATCTGTGGGAGATAGAAGTAATGGTGAAATGATTTTCATTCCACCAGTAGTGGGAATTTTAGATGATCCAAATTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCACCCTCTGTTGTTTCTATGTCTTCATTTCCTCACCAATATCAAACCCCTGCTATGGCTTCTTCATTCATTAATGCATCTTCTTCGATCTTCGAGAAGAGGCTGAATCCAAAACCTTATAATGGTATGCATATAGCGGCAGGATCTGGGAATTCGACGTTGAATTTGGTATACGTCGAAGCTGCACAGCAGGTGCTCGACGAAATGGTTAGCATCCGGGAAGCTTTGAAAGAGCTGAAGTCTAGGAAACTCAAAGGTTCCAGTGGTTTGGGTGTTGATTTCTGTAGAGAAAATGATGGGGGATGTAATGATATGAATGGGGAGATATGTTCCGGTTCGAGGGAGTCGTCGATCGCGAATTCGTTGCGTGATTTATCGCCTACCGAACGACAGGATTTGAAGAACAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACGAACATCTGCAATTGTTGTCGTCGTCTTTCGACACGGTAGCAGGCCGGGGGGCTGCAGAGTTCTACACTGCGCTTGCACACCAGACTATTTCGTGTCACTTTCGACGCTTGCAAGATGCAATCAATGCACAGATTGAGGTCACCAGGAGAACATTGGGGGAGCAAGATACTTCCCATTTTGTTCAAGAAGGCATTCCCCGTCTCCGCTTTGTCGACCAGCACCTCAGGCAACAGAGGGCACTTCAACAGCTCGGTGTCACGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCCGAAAGCTCCGTGTCGATTCTTCGCGCTTGGCTGTTCGAACACTTCCTCCATCCATATCCCAAGGATTCAGAGAAGCTTAAGCTATCAAGACAAACTGGCCTGACCAGAAACCAAGTTGCGAACTGGTTTATAAATGCACGTGTTCGGCTATGGAAACCAATGGTCGAGGAGATGTACAAAGAAGAATTCGGAGACTCGAACATGGACATCAAATCCTCACCAGAAAATGCATCCAAAGCCTCATGGAACAATTCACTATTCTCCGAAGATAGAGGAGGGGACGAATTACACGAGTTGCACGAGCAAGTCCTCTACCGCTCATGTTCTACCAACGACATGATCAAGTTGACTAACTTCTCGGTCGGAGGAGACGTTTCACTTGCGCTGGAATTGAAGCATTGTGAAGGTGATGAATTTGGGATGTTTGGGAGTAGTACCAACAGAATGGTTGGTTCAGTGGAGCTTGAGGCACAAGATTTGCCATGTTTGGAACCAGAAAGGCATCATCAATGCAGGCTCACCAGCTCAAATATGTTGCACGATTTTGTAGTTTGA 1617 45.33 IKNCLFPGLSNQRDSMLGDDQKIGCSSQEQPLCSGNLMMFMKNQDPSCRDYSEVFSGVSSNYVESVGDRSNGEMIFIPPVVGILDDPNFQCQGVSLSLSTHSPSVVSMSSFPHQYQTPAMASSFINASSSIFEKRLNPKPYNGMHIAAGSGNSTLNLVYVEAAQQVLDEMVSIREALKELKSRKLKGSSGLGVDFCRENDGGCNDMNGEICSGSRESSIANSLRDLSPTERQDLKNKNSKLLSLLGEVDRRYKQYYEHLQLLSSSFDTVAGRGAAEFYTALAHQTISCHFRRLQDAINAQIEVTRRTLGEQDTSHFVQEGIPRLRFVDQHLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLSRQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNMDIKSSPENASKASWNNSLFSEDRGGDELHELHEQVLYRSCSTNDMIKLTNFSVGGDVSLALELKHCEGDEFGMFGSSTNRMVGSVELEAQDLPCLEPERHHQCRLTSSNMLHDFVV 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6933530 6935550 + Carg09578-RA Car17g00796 165168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00796 538 Pfam Homeobox KN domain 364 403 IPR008422 GO:0003677|GO:0006355
Car17g00796 538 Pfam Associated with HOX 159 297 IPR006563 -
Car17g00796 538 Coils Coil 163 183 - -
Car17g00796 538 ProSiteProfiles 'Homeobox' domain profile. 344 407 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00796 Car-Chr17:6933530 Car20g00709 Car-Chr20:4092444 2.09E-105 dispersed
Car17g00796 Car-Chr17:6933530 Car08g00564 Car-Chr8:3728662 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5073 PF07526 POX 9.20E-34 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00796 - - cpep:111807101 1028.47