Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00854 ATGGGGATATATCTCAGCTCCCCCAAAACAGAAAAGGCCTCAGACGATGGTGAGAATGAAAGTCTTCGGTATGGGGTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGACGCTGTGAGTTTTCTGTCTATTGTTTCTGCTCCCTTTGATGTAAATCTCACCCTACCTAAGTTTCAGCATGCAGCCTGTCTAGATTTGGACACATCAACATCTTTCTTTGGTGTTTACGATGGCCATGGAGGTAAAGCAGTTTCAAAGTTCTGTGCCAAGTATCTCCATCAACAGGTGCTCAAGCATGAATCATACATGGCTGGGGATTTAGGAACTTCAGTACAGAAGGCCTTTCTTAGAATGGATGAGATGATGTGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTAGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGAGTGGTGAAGCTAACAATCAAGTGGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCAATCATACGAAATAACCAACTTGTGGTGGCCAATGCTGGGGATTCTCGCTGTGTCATTTCCAGAAAGGGCCAGGCATATAACCTATCTAAAGATCACAAGCCTGATCTTGAGGCTGAGAAGGACAGGATTTTGAAAGCCGGGGGATTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCACGGGCTATAGGTGACATGGAGTTTAAGCAGAATGAAACTATGCCTGCAGAAAAGCAGATTGTAACTGCCAATCCAGATGTAACAACTGTTGAGCTTTGTGAGGATGACGAATTTCTTGTTATTGCCTGCGATGGCATCTGGGATTGTATGTCCAGCCAACAACTGGTTGATTACATTGGAGATCAACTTAAAACGGAAAGTAAACTCTCAGTCATTTGTGAGAGAGTATTTGACAGATGCTTGGCACCCTCAGTTGGTGGTGAAGGATGTGACAACATGACTATGATCTTGGTTCAATTTAAGAAGCCCATCCACAACCCAAATGACGCTTCTACTTCTGCTGCGGAGCTGCCTTCAACGTCCAATCAACCGGTGTCTAATCCGAACGAAGGCCCTTCTAAAACTGAATAG 1158 44.99 MGIYLSSPKTEKASDDGENESLRYGVSSMQGWRATMEDAVSFLSIVSAPFDVNLTLPKFQHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHQQVLKHESYMAGDLGTSVQKAFLRMDEMMCGQRGWRELAILGDKMDKISGMIEGFIWSPKSGEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEAEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNETMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKTESKLSVICERVFDRCLAPSVGGEGCDNMTMILVQFKKPIHNPNDASTSAAELPSTSNQPVSNPNEGPSKTE 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7209200 7213405 - Carg18730-RA Car17g00854 165226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00854 385 ProSiteProfiles PPM-type phosphatase domain profile. 23 349 IPR001932 -
Car17g00854 385 MobiDBLite consensus disorder prediction 356 385 - -
Car17g00854 385 Pfam Protein phosphatase 2C 23 123 IPR001932 -
Car17g00854 385 Pfam Protein phosphatase 2C 178 333 IPR001932 -
Car17g00854 385 ProSitePatterns PPM-type phosphatase domain signature. 73 81 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00854 Car-Chr17:7209200 Car17g00957 Car-Chr17:7770078 7.41E-36 dispersed
Car01g01289 Car-Chr1:11625862 Car17g00854 Car-Chr17:7209200 1.83E-142 transposed
Car08g00498 Car-Chr8:3151221 Car17g00854 Car-Chr17:7209200 0 transposed
Car11g00268 Car-Chr11:1474633 Car17g00854 Car-Chr17:7209200 2.88E-06 transposed
Car17g00854 Car-Chr17:7209200 Car08g00497 Car-Chr8:3150001 6.09E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00854 K17499 - csv:101214132 673.315