Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g00855 | ATGATTATCACTGTGAAGGATTCGACGATGGTGACTCCGGCGGAGGAGACGCCGCGCCGGACTCTCTGGAACTCGAACGTCGATCTGGTGATACCGAGTATACACACGCCGAGCGTCTACTTCTACCGCCCGACCGGCGCCTCCAATTTCTTCGACGGTCAGGTTCTCAAGGAAGGCCTAAGCAAAGCGCTGGTGCCGTTTTATCCAATGGCCGGACGATTGAGACGCGATGAAGACGGTCGTATCGAGATCTACTGTAATGCTGAAGGTGTGCTTCTTGTCGAGGCCGAAACCACGGCGGTTATCGACGATTTCGGTGATTTCGCCCCGACGTTACAGCTTCGGCAACTTATTCCAGCCGTCGATTACTCTGGCGGAATCGAATCGTATCCTTTGCTGGTGTTACAGGTGACACACTTCAAATGCGGCGGCGTTTCACTGGGCGTAGGAATGCAGCACCATTTAGCGGACGGCTTTGCCGGTCTCCACTTTGTGAATACCTGGTCCGACATGTCGCGTGGCCTCGACCTTAAGCTTCAGCCCTTCATCGACCGGACCCTACTCAGAGCGCGGGACCCACCTCAACCGGCATTCCGTCACGTCGAATACGAACCGGCTCCGCCCATGAAAACTCCGGTCCAGCCGAACTCGGAAGGAACCACCGTCTCTGTATTCAAATTCACCCGCGAGCAGCTGAATCTACTCAAAGCCAAATCCAAAGAAAACGGCAATACTATCAACTACAGTTCATATGAGATGCTTTCCGGCCACGTCTGGCGCTGCACGTGCAAGGCGCGTGACCTTCCCGAGGATCAGGAGACTAAGCTCTACATTGCCACCGACGGCCGTGCTCGGTTGCGCCCGCCGCTTCCCAACGGCTACTTCGGCAACGTTATCTTCACAACTACGCCGCTCGCCATCGCCGGTGAACTGATGTCGAACCCGACGTGGTTCGCTGCCGGAAAAATCCACGACGCCTTGGTTCGGATGGACAACGATTATTTGAGATCGGCTTTGGATTATCTCGAACTGCAGCCGGACTTATCGGCGTTGGTCCGTGGTGCTCATACTTTCCGTTGCCCCAATTTGGGAATCACGAGCTGGGTCCGGCTGCCTATCCACGACGCCGATTTTGGGTGGGGCCGGCCGATTTTTATGGGCCCCGGCGGAATCGCGTACGAGGGATTGTCGTTTATAATCCCGAGTGCGTCCGACGATGGCAGCTTGTCAGTGGCGATTTCGCTGCAGACTCCACATATGAAGGTGTTTGAGAAGCTGTTCTTCGATCTTTAA | 1293 | 55.45 | MIITVKDSTMVTPAEETPRRTLWNSNVDLVIPSIHTPSVYFYRPTGASNFFDGQVLKEGLSKALVPFYPMAGRLRRDEDGRIEIYCNAEGVLLVEAETTAVIDDFGDFAPTLQLRQLIPAVDYSGGIESYPLLVLQVTHFKCGGVSLGVGMQHHLADGFAGLHFVNTWSDMSRGLDLKLQPFIDRTLLRARDPPQPAFRHVEYEPAPPMKTPVQPNSEGTTVSVFKFTREQLNLLKAKSKENGNTINYSSYEMLSGHVWRCTCKARDLPEDQETKLYIATDGRARLRPPLPNGYFGNVIFTTTPLAIAGELMSNPTWFAAGKIHDALVRMDNDYLRSALDYLELQPDLSALVRGAHTFRCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSASDDGSLSVAISLQTPHMKVFEKLFFDL | 430 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 7216232 | 7218899 | + | Carg18729-RA | Car17g00855 | 165227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g00855 | 430 | Gene3D | - | 210 | 430 | IPR023213 | - | |
| Car17g00855 | 430 | PANTHER | TRICHOTHECENE 3-O-ACETYLTRANSFERASE | 4 | 429 | - | - | |
| Car17g00855 | 430 | PANTHER | SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE | 4 | 429 | - | - | |
| Car17g00855 | 430 | Gene3D | - | 1 | 205 | IPR023213 | - | |
| Car17g00855 | 430 | Pfam | Transferase family | 2 | 426 | - | - | |
| Car17g00855 | 430 | MobiDBLite | consensus disorder prediction | 198 | 218 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g02804 | Car-Chr4:21435945 | Car17g00855 | Car-Chr17:7216232 | 8.94E-27 | dispersed | |
| Car06g00214 | Car-Chr6:1256402 | Car17g00855 | Car-Chr17:7216232 | 3.96E-37 | dispersed | |
| Car10g00033 | Car-Chr10:150325 | Car17g00855 | Car-Chr17:7216232 | 1.34E-93 | dispersed | |
| Car11g00020 | Car-Chr11:95864 | Car17g00855 | Car-Chr17:7216232 | 3.60E-89 | dispersed | |
| Car12g00951 | Car-Chr12:9606873 | Car17g00855 | Car-Chr17:7216232 | 3.05E-55 | dispersed | |
| Car20g00791 | Car-Chr20:4750413 | Car17g00855 | Car-Chr17:7216232 | 1.26E-19 | dispersed | |
| Car05g01126 | Car-Chr5:10772364 | Car17g00855 | Car-Chr17:7216232 | 3.03E-18 | transposed | |
| Car15g00234 | Car-Chr15:1316157 | Car17g00855 | Car-Chr17:7216232 | 2.05E-29 | transposed | |
| Car16g00461 | Car-Chr16:2933075 | Car17g00855 | Car-Chr17:7216232 | 1.11E-29 | transposed | |
| Car20g00505 | Car-Chr20:2791114 | Car17g00855 | Car-Chr17:7216232 | 7.55E-16 | transposed | |
| Car17g00855 | Car-Chr17:7216232 | Car08g00496 | Car-Chr8:3145217 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g00855 | K13065 | - | csv:101214857 | 829.706 |