Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00860 ATGGCCAAGATCTCACATCCGCCGCACAAGAATTCCATTTCTACCACCGCTAATTCTCAGTCTTCTACAGTCCATCACAGCCAGAAGAAGGTACTCAAGCGTACGCGTAAGTCCACTCCTCGAGATGCTCCTGCTCAGCGTAGCTCTGTTTACCGCGGAGTCACCAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTTGCTGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAGAAATCAAGAAATTGGTTGAAGATCATCTGTTCAAGTCCTCTGATCTTATTCTATTAACGTACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAGGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCGAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATACGCTACCCAAGAGGAAGCTGCCACAGCTTACGACATGGCCGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTATATCAAATACCTCCGTCCTGAGGAACAAGATATCCCAAACAACAATAACCGTCCACCAAGCCCTAACGCCGGTAAAACGACTTCAGAATTGGACCCCAAATCCCTCCTTGAATTCACCTTTCCGTCCCAATGTTCGAGTTCCGACCAACCCATCTCCACGCCACCGCTGGGACCTGACGGCGGTGACTCCTCGTCGTCGTCGTCGTCGAACACGCTGGAGCTTCTACTCCATTCCTCGAAATTTAAAGATATAATAGAAAGAAAACCCACCGCCGACCCTCCACAGACGCCGCCGGAATCTGACCGGCCTCGCCGCTGTATTCCTGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGACGACATTGCCGAAGGCGACGACGGCATTTTTGGGTATCTAAATTCGTTTTTACCTTCATCAATTTTTCACTACGCACTCGATGCTTAA 1137 48.28 MAKISHPPHKNSISTTANSQSSTVHHSQKKVLKRTRKSTPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQGAYDDEEAAAHAYDLAALKYWGTETVLNFPEIKKLVEDHLFKSSDLILLTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKYLRPEEQDIPNNNNRPPSPNAGKTTSELDPKSLLEFTFPSQCSSSDQPISTPPLGPDGGDSSSSSSSNTLELLLHSSKFKDIIERKPTADPPQTPPESDRPRRCIPDDIQTYFDCTQDSDDIAEGDDGIFGYLNSFLPSSIFHYALDA 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7254275 7258972 - Carg18724-RA Car17g00860 165232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00860 378 MobiDBLite consensus disorder prediction 269 297 - -
Car17g00860 378 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Car17g00860 378 PRINTS Ethylene responsive element binding protein signature 95 115 IPR001471 GO:0003700|GO:0006355
Car17g00860 378 SUPERFAMILY DNA-binding domain 49 113 IPR016177 GO:0003677
Car17g00860 378 MobiDBLite consensus disorder prediction 313 333 - -
Car17g00860 378 SUPERFAMILY DNA-binding domain 165 226 IPR016177 GO:0003677
Car17g00860 378 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 360 - -
Car17g00860 378 MobiDBLite consensus disorder prediction 237 257 - -
Car17g00860 378 SMART rav1_2 166 230 IPR001471 GO:0003700|GO:0006355
Car17g00860 378 SMART rav1_2 50 119 IPR001471 GO:0003700|GO:0006355
Car17g00860 378 MobiDBLite consensus disorder prediction 1 51 - -
Car17g00860 378 CDD AP2 165 226 IPR001471 GO:0003700|GO:0006355
Car17g00860 378 Gene3D AP2/ERF domain 165 226 IPR036955 GO:0003700|GO:0006355
Car17g00860 378 Gene3D AP2/ERF domain 50 114 IPR036955 GO:0003700|GO:0006355
Car17g00860 378 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 360 - -
Car17g00860 378 MobiDBLite consensus disorder prediction 236 257 - -
Car17g00860 378 MobiDBLite consensus disorder prediction 8 26 - -
Car17g00860 378 ProSiteProfiles AP2/ERF domain profile. 50 113 IPR001471 GO:0003700|GO:0006355
Car17g00860 378 ProSiteProfiles AP2/ERF domain profile. 166 224 IPR001471 GO:0003700|GO:0006355
Car17g00860 378 Pfam AP2 domain 49 105 IPR001471 GO:0003700|GO:0006355
Car17g00860 378 Pfam AP2 domain 165 216 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00544 Car-Chr14:2995913 Car17g00860 Car-Chr17:7254275 1.51E-65 dispersed
Car17g00860 Car-Chr17:7254275 Car11g00359 Car-Chr11:1969480 6.95E-83 dispersed
Car10g00411 Car-Chr10:2061374 Car17g00860 Car-Chr17:7254275 3.01E-97 transposed
Car17g00860 Car-Chr17:7254275 Car08g00489 Car-Chr8:3113954 5.32E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5077 PF00847 AP2 3.10E-09 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00860 K09285 - csv:101206499 561.992