Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car17g00860 | ATGGCCAAGATCTCACATCCGCCGCACAAGAATTCCATTTCTACCACCGCTAATTCTCAGTCTTCTACAGTCCATCACAGCCAGAAGAAGGTACTCAAGCGTACGCGTAAGTCCACTCCTCGAGATGCTCCTGCTCAGCGTAGCTCTGTTTACCGCGGAGTCACCAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTTGCTGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAGAAATCAAGAAATTGGTTGAAGATCATCTGTTCAAGTCCTCTGATCTTATTCTATTAACGTACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAGGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCGAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATACGCTACCCAAGAGGAAGCTGCCACAGCTTACGACATGGCCGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTATATCAAATACCTCCGTCCTGAGGAACAAGATATCCCAAACAACAATAACCGTCCACCAAGCCCTAACGCCGGTAAAACGACTTCAGAATTGGACCCCAAATCCCTCCTTGAATTCACCTTTCCGTCCCAATGTTCGAGTTCCGACCAACCCATCTCCACGCCACCGCTGGGACCTGACGGCGGTGACTCCTCGTCGTCGTCGTCGTCGAACACGCTGGAGCTTCTACTCCATTCCTCGAAATTTAAAGATATAATAGAAAGAAAACCCACCGCCGACCCTCCACAGACGCCGCCGGAATCTGACCGGCCTCGCCGCTGTATTCCTGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGACGACATTGCCGAAGGCGACGACGGCATTTTTGGGTATCTAAATTCGTTTTTACCTTCATCAATTTTTCACTACGCACTCGATGCTTAA | 1137 | 48.28 | MAKISHPPHKNSISTTANSQSSTVHHSQKKVLKRTRKSTPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQGAYDDEEAAAHAYDLAALKYWGTETVLNFPEIKKLVEDHLFKSSDLILLTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKYLRPEEQDIPNNNNRPPSPNAGKTTSELDPKSLLEFTFPSQCSSSDQPISTPPLGPDGGDSSSSSSSNTLELLLHSSKFKDIIERKPTADPPQTPPESDRPRRCIPDDIQTYFDCTQDSDDIAEGDDGIFGYLNSFLPSSIFHYALDA | 378 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 7254275 | 7258972 | - | Carg18724-RA | Car17g00860 | 165232 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car17g00860 | 378 | MobiDBLite | consensus disorder prediction | 269 | 297 | - | - | |
Car17g00860 | 378 | PRINTS | Ethylene responsive element binding protein signature | 51 | 62 | IPR001471 | GO:0003700|GO:0006355 | |
Car17g00860 | 378 | PRINTS | Ethylene responsive element binding protein signature | 95 | 115 | IPR001471 | GO:0003700|GO:0006355 | |
Car17g00860 | 378 | SUPERFAMILY | DNA-binding domain | 49 | 113 | IPR016177 | GO:0003677 | |
Car17g00860 | 378 | MobiDBLite | consensus disorder prediction | 313 | 333 | - | - | |
Car17g00860 | 378 | SUPERFAMILY | DNA-binding domain | 165 | 226 | IPR016177 | GO:0003677 | |
Car17g00860 | 378 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 360 | - | - | |
Car17g00860 | 378 | MobiDBLite | consensus disorder prediction | 237 | 257 | - | - | |
Car17g00860 | 378 | SMART | rav1_2 | 166 | 230 | IPR001471 | GO:0003700|GO:0006355 | |
Car17g00860 | 378 | SMART | rav1_2 | 50 | 119 | IPR001471 | GO:0003700|GO:0006355 | |
Car17g00860 | 378 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Car17g00860 | 378 | CDD | AP2 | 165 | 226 | IPR001471 | GO:0003700|GO:0006355 | |
Car17g00860 | 378 | Gene3D | AP2/ERF domain | 165 | 226 | IPR036955 | GO:0003700|GO:0006355 | |
Car17g00860 | 378 | Gene3D | AP2/ERF domain | 50 | 114 | IPR036955 | GO:0003700|GO:0006355 | |
Car17g00860 | 378 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 360 | - | - | |
Car17g00860 | 378 | MobiDBLite | consensus disorder prediction | 236 | 257 | - | - | |
Car17g00860 | 378 | MobiDBLite | consensus disorder prediction | 8 | 26 | - | - | |
Car17g00860 | 378 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Car17g00860 | 378 | ProSiteProfiles | AP2/ERF domain profile. | 166 | 224 | IPR001471 | GO:0003700|GO:0006355 | |
Car17g00860 | 378 | Pfam | AP2 domain | 49 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Car17g00860 | 378 | Pfam | AP2 domain | 165 | 216 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car14g00544 | Car-Chr14:2995913 | Car17g00860 | Car-Chr17:7254275 | 1.51E-65 | dispersed | |
Car17g00860 | Car-Chr17:7254275 | Car11g00359 | Car-Chr11:1969480 | 6.95E-83 | dispersed | |
Car10g00411 | Car-Chr10:2061374 | Car17g00860 | Car-Chr17:7254275 | 3.01E-97 | transposed | |
Car17g00860 | Car-Chr17:7254275 | Car08g00489 | Car-Chr8:3113954 | 5.32E-06 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5077 | PF00847 | AP2 | 3.10E-09 | CL0081 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car17g00860 | K09285 | - | csv:101206499 | 561.992 |