Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00882 ATGGAGCTTGGCCTGAGCTTGGGCGATGCTCCCAAGCCCTTCCGCTTCGTTGAGAAGCAGCCGCCAGTAACGCCGCGGCAGCGGCGGATTTCCCGGCCTGATTTAGGGTTCTGCGTCGACTTATCGATTGGCCGTCCGGTCGCCGGAGAGAAAGAAGACGACGAAGAGAAGATCAATCAGAGAGATTATGAATCCGACGGTAATGAAGATCCACCGATTCAACTCGATCTTCTTCCTCATAATCCCGTTCCGCGAAACCTAACTAATCCGTACCAAGGATTTCCATGGCCGTCGTCCGAAAACGATGAAGGTGAAGATCGAACCGCATCGCCTAACAGTGCGGCGTCGTCGTTTCAGATGGAGTTTGGATTGTACGGCGGCGGAGGGAACATTTCTTCCCAGAGAGAACAAATGGAAAATGGCGTAATCGAATCTGAGAGAGCGTCTTCACGAGCGAGCGATGAAGATGAAAATGGATCCACGAGGAAGAAACTCAGACTCTCGAAAGAACAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCCAAACAGAAACTTGCACTCGCTAAGCAACTGAATCTCCGTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGGAGAGCCAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAACGATGCTGTGAAACATTAACAGAAGAGAACAGACGACTTCAAAAGGAGCTTCAAGAATTGAGAGCTTTGAAAACCACAGACTCATTTTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTGACCTCAACATCAGCCGGCTCCAGCGGCGGCAAATCGACGGAGGCAGTTTCGAAACGATCTGGTTTCGCCATTACTGGGCGACCAAGCTCCTCCTCTTTCCCATTTTCTGCTTAA 939 49.31 MELGLSLGDAPKPFRFVEKQPPVTPRQRRISRPDLGFCVDLSIGRPVAGEKEDDEEKINQRDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISSQREQMENGVIESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTDSFYMQLPATTLTMCPSCERVTSTSAGSSGGKSTEAVSKRSGFAITGRPSSSSFPFSA 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7382958 7384244 + Carg18702-RA Car17g00882 165254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00882 312 Coils Coil 224 254 - -
Car17g00882 312 MobiDBLite consensus disorder prediction 130 147 - -
Car17g00882 312 MobiDBLite consensus disorder prediction 276 312 - -
Car17g00882 312 Pfam Homeodomain 162 216 IPR001356 GO:0003677
Car17g00882 312 ProSiteProfiles 'Homeobox' domain profile. 158 218 IPR001356 GO:0003677
Car17g00882 312 MobiDBLite consensus disorder prediction 46 68 - -
Car17g00882 312 MobiDBLite consensus disorder prediction 148 167 - -
Car17g00882 312 MobiDBLite consensus disorder prediction 1 113 - -
Car17g00882 312 MobiDBLite consensus disorder prediction 125 167 - -
Car17g00882 312 Pfam Homeobox associated leucine zipper 218 252 IPR003106 GO:0006355|GO:0043565
Car17g00882 312 ProSitePatterns 'Homeobox' domain signature. 193 216 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00792 Car-Chr4:4575375 Car17g00882 Car-Chr17:7382958 6.97E-75 dispersed
Car11g00318 Car-Chr11:1739736 Car17g00882 Car-Chr17:7382958 7.36E-57 dispersed
Car16g01059 Car-Chr16:9103007 Car17g00882 Car-Chr17:7382958 3.23E-69 dispersed
Car01g00185 Car-Chr1:1013013 Car17g00882 Car-Chr17:7382958 2.79E-68 wgd
Car14g00376 Car-Chr14:1884739 Car17g00882 Car-Chr17:7382958 1.57E-104 wgd
Car17g00882 Car-Chr17:7382958 Car06g00089 Car-Chr6:617525 2.52E-86 wgd
Car17g00882 Car-Chr17:7382958 Car08g00467 Car-Chr8:2988310 4.43E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5078 PF00046 Homeodomain 2.10E-15 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00882 K09338 - csv:101221600 516.538