Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car17g00882 | ATGGAGCTTGGCCTGAGCTTGGGCGATGCTCCCAAGCCCTTCCGCTTCGTTGAGAAGCAGCCGCCAGTAACGCCGCGGCAGCGGCGGATTTCCCGGCCTGATTTAGGGTTCTGCGTCGACTTATCGATTGGCCGTCCGGTCGCCGGAGAGAAAGAAGACGACGAAGAGAAGATCAATCAGAGAGATTATGAATCCGACGGTAATGAAGATCCACCGATTCAACTCGATCTTCTTCCTCATAATCCCGTTCCGCGAAACCTAACTAATCCGTACCAAGGATTTCCATGGCCGTCGTCCGAAAACGATGAAGGTGAAGATCGAACCGCATCGCCTAACAGTGCGGCGTCGTCGTTTCAGATGGAGTTTGGATTGTACGGCGGCGGAGGGAACATTTCTTCCCAGAGAGAACAAATGGAAAATGGCGTAATCGAATCTGAGAGAGCGTCTTCACGAGCGAGCGATGAAGATGAAAATGGATCCACGAGGAAGAAACTCAGACTCTCGAAAGAACAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCCAAACAGAAACTTGCACTCGCTAAGCAACTGAATCTCCGTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGGAGAGCCAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAACGATGCTGTGAAACATTAACAGAAGAGAACAGACGACTTCAAAAGGAGCTTCAAGAATTGAGAGCTTTGAAAACCACAGACTCATTTTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTGACCTCAACATCAGCCGGCTCCAGCGGCGGCAAATCGACGGAGGCAGTTTCGAAACGATCTGGTTTCGCCATTACTGGGCGACCAAGCTCCTCCTCTTTCCCATTTTCTGCTTAA | 939 | 49.31 | MELGLSLGDAPKPFRFVEKQPPVTPRQRRISRPDLGFCVDLSIGRPVAGEKEDDEEKINQRDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISSQREQMENGVIESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTDSFYMQLPATTLTMCPSCERVTSTSAGSSGGKSTEAVSKRSGFAITGRPSSSSFPFSA | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 7382958 | 7384244 | + | Carg18702-RA | Car17g00882 | 165254 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car17g00882 | 312 | Coils | Coil | 224 | 254 | - | - | |
Car17g00882 | 312 | MobiDBLite | consensus disorder prediction | 130 | 147 | - | - | |
Car17g00882 | 312 | MobiDBLite | consensus disorder prediction | 276 | 312 | - | - | |
Car17g00882 | 312 | Pfam | Homeodomain | 162 | 216 | IPR001356 | GO:0003677 | |
Car17g00882 | 312 | ProSiteProfiles | 'Homeobox' domain profile. | 158 | 218 | IPR001356 | GO:0003677 | |
Car17g00882 | 312 | MobiDBLite | consensus disorder prediction | 46 | 68 | - | - | |
Car17g00882 | 312 | MobiDBLite | consensus disorder prediction | 148 | 167 | - | - | |
Car17g00882 | 312 | MobiDBLite | consensus disorder prediction | 1 | 113 | - | - | |
Car17g00882 | 312 | MobiDBLite | consensus disorder prediction | 125 | 167 | - | - | |
Car17g00882 | 312 | Pfam | Homeobox associated leucine zipper | 218 | 252 | IPR003106 | GO:0006355|GO:0043565 | |
Car17g00882 | 312 | ProSitePatterns | 'Homeobox' domain signature. | 193 | 216 | IPR017970 | GO:0000981|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g00792 | Car-Chr4:4575375 | Car17g00882 | Car-Chr17:7382958 | 6.97E-75 | dispersed | |
Car11g00318 | Car-Chr11:1739736 | Car17g00882 | Car-Chr17:7382958 | 7.36E-57 | dispersed | |
Car16g01059 | Car-Chr16:9103007 | Car17g00882 | Car-Chr17:7382958 | 3.23E-69 | dispersed | |
Car01g00185 | Car-Chr1:1013013 | Car17g00882 | Car-Chr17:7382958 | 2.79E-68 | wgd | |
Car14g00376 | Car-Chr14:1884739 | Car17g00882 | Car-Chr17:7382958 | 1.57E-104 | wgd | |
Car17g00882 | Car-Chr17:7382958 | Car06g00089 | Car-Chr6:617525 | 2.52E-86 | wgd | |
Car17g00882 | Car-Chr17:7382958 | Car08g00467 | Car-Chr8:2988310 | 4.43E-173 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5078 | PF00046 | Homeodomain | 2.10E-15 | CL0123 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car17g00882 | K09338 | - | csv:101221600 | 516.538 |