Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00906 ATGACAGACCCTAATCACTCCAATTCCTTCAACTTCATCCCTCTCCCATCCTCTCCGCCTTCAAATTCCGGTTTCTCCCAATGCCGCCACCGTCCTCCTCCTCCTCCGTCACCGCAAGCCCTCCCTCTCCTCAACACCTTCTCAGCGGAAACCACCGATCATCCCTCCTCCTCCACCAGATACGAACACGACTCTCCGCCACTAGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCAATCTCGACTACTCTCGTTCCATCTCGCCAGACCCCACTGGGAAAACCCTCGACGGCGATATTTCCGACCACCCTTTGCCGATCTCCGGCAAAGGTCAGTTCTGGATTCCGACCCCATCTCAGATCCTCATCGGTCCTACTCAGTTCTCTTGCCCTCTTTGTTCTAAAGCATTCAATAGATACAATAATCTTCAGATGCACATGTGGGGGCATGGTTCGCAATACAGAAAAGGACCAGAGTCACTAAAAGGAACACAGCCAACGGCAATGCTTAAGCTGCCATGCTATTGCTGCGCGCCAGGGTGCAAACACAACATCGACAACCCTCGGTCGCGGCCGCTCAAGGACTTCCGCACCCTCCAAACGCATTACAAGCGAAAGCATGGAATCAAGCCCTTCACTTGTAGAAAATGCACCAAAGCCTTCGCGGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGTGGCAAGATTTGGTATTGCTTTTGTGGCTCGGACTTCAAACATAAGCGCTCCCTCAAGGACCACATTAAGGCCTTCGGTCGTGGACATGGTGCACTCGGCCTTGACTACTTTGACGACGACAATGAACCCGGTTCTGAACTTGAACACGAACAACACGAACCTCAACTCCTCTTCCATCTCCATCAATGA 891 52.3 MTDPNHSNSFNFIPLPSSPPSNSGFSQCRHRPPPPPSPQALPLLNTFSAETTDHPSSSTRYEHDSPPLALDFSLSCPSSNLDYSRSISPDPTGKTLDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLKLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFDDDNEPGSELEHEQHEPQLLFHLHQ 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7471048 7473060 - Carg18678-RA Car17g00906 165278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00906 296 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Car17g00906 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Car17g00906 296 MobiDBLite consensus disorder prediction 1 28 - -
Car17g00906 296 MobiDBLite consensus disorder prediction 1 66 - -
Car17g00906 296 Pfam Zinc finger, C2H2 type 128 147 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00444 Car17g00906 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00406 Car-Chr14:2050856 Car17g00906 Car-Chr17:7471048 2.74E-104 wgd
Car17g00906 Car-Chr17:7471048 Car02g01028 Car-Chr2:7194320 1.34E-113 wgd
Car17g00906 Car-Chr17:7471048 Car20g00061 Car-Chr20:336849 1.43E-113 wgd
Car17g00906 Car-Chr17:7471048 Car06g00066 Car-Chr6:433765 3.74E-105 wgd
Car17g00906 Car-Chr17:7471048 Car08g00444 Car-Chr8:2896094 4.14E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5082 PF00096 zf-C2H2 0.0015 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00906 - - csv:101209911 500.745