Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00926 ATGGCGGAAGCCAAGCGTCGCGCAAAGCGCCCTAGAATTACGAGGGGGGACGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCGACCAGTGTTGGAGCATATGTGAAGCGCGGGGAGGAGTCTGGTTATGTCAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAATATTACAATTACACGTAAAATGGACACACACAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCAAAAAAGGATGTAGCTGGAATCATTCAAAGTTTTAACATTCAAGTTAATAACTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCCGTCCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGCGATCCTCAACTTCCAATCCTACATCGTGTACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAACGAGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTAAAGGCATTAAATGTCGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGAAGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAGCTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCAAAAAAGAAGTTAGATGAAGCTGCAAATACTTTGAATGATTTAAAGGAGCCAATTGAGTATGATCACTTGGTTTAA 870 40.8 MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKSEWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEYDHLV 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7591702 7596101 + Carg18658-RA Car17g00926 165298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00926 289 Coils Coil 195 229 - -
Car17g00926 289 Coils Coil 248 279 - -
Car17g00926 289 Pfam AAA domain 28 281 IPR038729 GO:0140664
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00926 K22803 SMC5; structural maintenance of chromosomes protein 5 - csv:101210248 509.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00322 Car-Chr4:1788256 Car17g00926 Car-Chr17:7591702 3.99E-11 dispersed
Car17g00926 Car-Chr17:7591702 Car17g01218 Car-Chr17:9270705 4.86E-09 dispersed
Car17g00926 Car-Chr17:7591702 Car17g00928 Car-Chr17:7618452 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00928 . 4 1049 Structural Maintenance of Chromosomes family AT5G15920 65.8 0.0e+00 1291.2
Car17g00926 . 4 237 Structural Maintenance of Chromosomes family AT5G15920 81.6 1.3e-106 385.2
Car04g00322 . 13 1084 Structural Maintenance of Chromosomes family AT5G07660 59.8 0.0e+00 1179.1
Car04g00322 . 10 1084 Structural Maintenance of Chromosomes family AT5G61460 62.6 0.0e+00 1248.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0037530 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00926 Car_Chr17 FPKM 105.278 117.954819 43.50869 41.764072 21.149605 18.827883 19.542583 37.842098 36.627705 39.65712