Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00928 ATGGCGGAAGCCAAGCGTCGCGCAAAGCGCCCTAGAATTACGAGGGGGGACGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCGACCAGTGTAGGCGCATATGTGAAGCGCGGGGAGGAGTCTGGTTACGTCAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAATATTACAATTACACGTAAAATGGACACACACAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCAAAAAAGGATGTATCTGGAATCATTCAAAGTTTTAACATTCAAGTTAATAACTTGACTCAAGACAGGGTTTGTGAGTTTGCCAAATTAACTCCCGTCCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTCCAATCCTACATCGTGTACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAACGAGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTAAAGGCATTAAATGTTGAGCAAGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGAAGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAGCTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCAAAAAAGAAGTTAGATGAAGCTGCAAATACTTTGAATGATTTAAAGGAGCCAATTGAGAAACAAAGAAAGGAGAAGGCAAAGTTGGATGCGAAAACTAAGAAGTATAGCACTCTCATTAATAATAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAATCATTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACAAGCTAAAGAGGAACTTGAAGCTGCTGAATTGGAACTTCAGAATTTGCCTCCTTACAAACATCCCAAGGACGAGATTGAACGGTTGCGCGCTCAAATTTTGGAGCTGGAAGTTTCAGCAAGTCAGAAGAGACTTACGAAGTCAGAGATTGAAAAAAATATATCCCAAAAAAGAAATACTTTGAGGCAGTGCTTGGATAAGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAATTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCAAATCGGACTCATGCTGACTACTTAGAAGGTCATATCCCATCATATGCCTGGAAGTCCTTCATAACTCAAGATTCGGACGATCGTGACATAATGGTAAAAAACTTGGGTTCATTTGGCGTTCCCATCTTAAACTACGTGGGAGGTGAAAGGCACACAAATCAGCATTTTGAGCTGTCTGAGGAGGTTCGTGCATTTGGCATATATTCCCGGCTAGACCAAATTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATACAGTTTGGTTTGGAGCATTCATATATTGGCTCAAAGGTAACTGATCAGAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCGGGAACTGTGGAACCAGTTGATCGCTCACGTCTTCTCTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGGTCCAGGAAAAATGAGCTAGAAGAATCTATTTCTGCGTTGGAAGAAAATTGTAAATCAAGTCAGACTGAACTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGGGATGATATTTTAAATACTGTGCAACATGAGAAGAGAAAACGCCGTGAAATGGAAAATCGCATTGATCAAAGAAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACTTTGATACTGTTGTGGCCAAGCTTGCCGACCAAGCTACAAATTTTAACGTTCAAAGGTTCAATTGTGCAATTGAAATTAAGCATTTGCTTGTTGAGGCCGTTTCCTATAGACAGAACTTGACTAAGAGCCATATGTCCTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTAAATCTGAAGCAGCATGAAAAGTTTGCTCTGCAAGCATCAGTGCAGTTTGAGTACTGCAAGAAGGAAGTCGAGGACTATCGACAGCAACTCTCAGTTGCCAAGAAGTATGCAGAATCTATTGCTGTGATCACACCTGACCTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAAGAATTGGAAGCTGCTATTCAAGATAATATTTCTCAGGCTAATTCCATTCTGTTCTTAAACCATAATGTGCTTGAGGAATACGAACATCGTCAGCGTCAGATAAATACCATTGCAAGAAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACTTTAAGAAAACTTGTTTCTCAGATAAATGAGACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAGCATGATATGGACTTCGATCAATATGGGATTCTTATTAAAGTGAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAGTCGGGAGGGGAACGCTCGGTGTCGACAATCTTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAGTTGGTGAGAGCTGCCAGCCAAACAAATACACCACAGTGCTTCCTACTCACTCCAAAGTTACTTCCAGAACTGGAATATAGTGGGGCCTGTAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCGAGAGCATGGAGCAATGGAGATAGCTGGGGAACATTAATGAACTACGTTGGAGCAAGCCGATGTTGA 3150 40.95 MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKSEWLFNGKVVPKKDVSGIIQSFNIQVNNLTQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEKQRKEKAKLDAKTKKYSTLINNNHKKRMELQETENHLGVQVQGKLKEMEDLRKQEESRQQRILQAKEELEAAELELQNLPPYKHPKDEIERLRAQILELEVSASQKRLTKSEIEKNISQKRNTLRQCLDKLKDMENTNTKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYAWKSFITQDSDDRDIMVKNLGSFGVPILNYVGGERHTNQHFELSEEVRAFGIYSRLDQIFDAPAAVKEVLTIQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGTVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESISALEENCKSSQTELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDFDTVVAKLADQATNFNVQRFNCAIEIKHLLVEAVSYRQNLTKSHMSSIEIEAKIRELEVNLKQHEKFALQASVQFEYCKKEVEDYRQQLSVAKKYAESIAVITPDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINTIARKLEADKHELRKCMAEVDELKGNWLPTLRKLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQYGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSGACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGASRC 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7618452 7636014 + Carg27319-RA Car17g00928 165300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00928 1049 Coils Coil 325 355 - -
Car17g00928 1049 Coils Coil 618 652 - -
Car17g00928 1049 Coils Coil 660 694 - -
Car17g00928 1049 Coils Coil 838 875 - -
Car17g00928 1049 Coils Coil 244 292 - -
Car17g00928 1049 Coils Coil 191 225 - -
Car17g00928 1049 Coils Coil 397 424 - -
Car17g00928 1049 Pfam RecF/RecN/SMC N terminal domain 25 989 IPR003395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00928 K22803 SMC5; structural maintenance of chromosomes protein 5 - csv:101210248 1918.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00928 Car-Chr17:7618452 Car17g01218 Car-Chr17:9270705 1.47E-07 dispersed
Car17g00926 Car-Chr17:7591702 Car17g00928 Car-Chr17:7618452 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1074 . . . . . . . . . Cmo17g00945 . . . . Sed07g0592 . Cpe12g00841 Bhi09g00709 Tan06g0629 Cmetu01g0859 . Hepe03g1771 . . . . . . . . . . Cone20ag1052 . . Lsi02g02546 . . . . . . . . . . . . . . . Cma17g00970 . Car17g00928 . . . . . . . . . Cla09g00408 Cam09g0435 Cec09g0438 Cco09g0425 Clacu09g0440 . Cre09g0421 . . Chy01g01830 Cme01g02432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00928 . 4 1049 Structural Maintenance of Chromosomes family AT5G15920 65.8 0.0e+00 1291.2
Car17g00926 . 4 237 Structural Maintenance of Chromosomes family AT5G15920 81.6 1.3e-106 385.2
Car04g00322 . 13 1084 Structural Maintenance of Chromosomes family AT5G07660 59.8 0.0e+00 1179.1
Car04g00322 . 10 1084 Structural Maintenance of Chromosomes family AT5G61460 62.6 0.0e+00 1248.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00928 Car_Chr17 FPKM 17.340479 16.591974 13.254081 15.216321 9.621036 9.657535 7.391542 15.451643 17.31159 18.818794