Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00984 ATGAAAGATACCGGACCTCTGGACTTCAGCGCCGAAAGAGTTCTCGCAAAGGAGTTCCTTGCGAACTTCGCCGATGCAAATGGTGAAGCGAAGTACTTAAACATCCTGCAAGATGTTGCAAATCGCAGAGTCCGTGCAATTCAAATCGATCTCGAGGATCTCTTTAATTATAAGGACTTGGACGAGGATTTCCTCAAACGTATTACAGAAAACACCCGGCGATATATTGGAACTTTTGCCGATGCTATTGATGAGCTCATGCCGGAGCCAACAGAGGCGTTTGTAGATGATGATCACGACATACTAATGACACAAAGGTCTGATGATGGACCTGATACTGTCGATAACCCTGACCCACGCCAAAAAATGCCGCCAGAAATCAAACGATACTTTGAAGTTTACATTAGAGCACCTTCAAAGGGCCGTCCGTTTACCATAAGAGAGGTCAAAGCGTCATATATTGGTCAACTTGTGAGAATATCTGGTATTGTGACACGCTGTTCAGATGTTAAGCCGTTGATGCAGGTGGCAGTTTATACATGCGAAGACTGTGGTTTTGAGATATACCAGGAGGTAACAGCTCGAGTCTTCATGCCTCTATTTGAGTGTCCATCTCAGCGTTGTAGAACAAACCAAACGAAAGGCAACTTAATTCTTCAACTCAGAGCATCCAAATTTCTGAAGTTTCAGGAGGCCAAACTTCAAGAGTTAGCTGAGCATGTTCCGAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCTCCAGGTGATGTTGTTGAACTATCAGGAATTTTTCTGCCCATTCCTTATACGGGTTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCAATCACCCATTTCAAGAAAAAATATGAGGAATACGAACTTCGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCTGAGGATGGTGATATTTACAACAAACTGGCACGATCCTTGGCACCTGAAATTTTTGGTCATGAAGATATTAAAAAAGCTTTACTGCTTCTTCTTGTTGGTGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTCTAATGGGTGATCCTGGTGTTGCAAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGAGTCTACACGACTGGCAAAGGTAGCAGTGGTGTTGGTCTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTTCTTGAAGGAGGGGCATTGGTGTTAGCTGACATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATACATGAAGTCATGGAGCAACAGACCGTGAGCATTGCCAAGGCTGGAATCACCACGTCTCTAAATGCCAGGACTGCTGTCCTTGCTGCGGCCAATCCAGCATGGGGAAGATATGACCTCCGTAGAACTCCTGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTCGATCTTCTTTGGTTGATCCTAGATCGAGCTGACATGGATAATGATCTTGAAATGGCTAGACATGTTGTTTATGTCCATCAGAATAGAGAATCTCCTGCTCTTGGCTTCACCCCTCTTGAATCATCTGTTCTTCGAGCTTATATTTCCGCCGCAAGAAGATTGTCTCCTTACGTTCCCAAGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGCATCCGACAGGAAGAAGCTAAATCTAACACTCCCCATTCATATACCACAGTGAGAACTCTACTAAGCATTCTTCGGATATCAGCTGCTCTAGCAAGGCTTAGATTCTCCGAGACTGTGGCCCAAAGTGATGTTGATGAGGCTCTAAGGTTAATGCAAATGTCAAAATTTTCTCTATACTCAGATGACCGTCAAAAGTCTGGTCTAGATGCTATCTCAGATATCTATTCAATCTTGCGCGATGAAGCTGCCAGAACTAATAAAATGGATGTGAGCTATGCACACGCCCTTAACTGGATTTCCAGGAAGGGATACAGCGAAGCTCAACTAAAAGAATGTTTGGAGGAGTATGCTGCCTTGAATGTGTGGCAAATACATCCACACACCTTTGACATTCGGTTTATAGATGCTTGA 2166 43.91 MKDTGPLDFSAERVLAKEFLANFADANGEAKYLNILQDVANRRVRAIQIDLEDLFNYKDLDEDFLKRITENTRRYIGTFADAIDELMPEPTEAFVDDDHDILMTQRSDDGPDTVDNPDPRQKMPPEIKRYFEVYIRAPSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7900030 7905778 - Carg07123-RA Car17g00984 165356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00984 721 CDD AAA 360 515 - -
Car17g00984 721 ProSitePatterns MCM family signature. 438 446 IPR018525 GO:0003677|GO:0005524|GO:0006260
Car17g00984 721 Pfam MCM P-loop domain 317 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car17g00984 721 Pfam MCM OB domain 146 276 IPR033762 -
Car17g00984 721 ProSiteProfiles MCM family domain profile. 329 535 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car17g00984 721 Pfam MCM AAA-lid domain 556 639 IPR041562 -
Car17g00984 721 Pfam MCM N-terminal domain 17 135 IPR027925 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01490 Car-Chr6:10509629 Car17g00984 Car-Chr17:7900030 7.33E-104 dispersed
Car07g00005 Car-Chr7:45880 Car17g00984 Car-Chr17:7900030 3.76E-111 dispersed
Car07g00105 Car-Chr7:637765 Car17g00984 Car-Chr17:7900030 7.76E-17 dispersed
Car11g00916 Car-Chr11:5807542 Car17g00984 Car-Chr17:7900030 3.87E-90 dispersed
Car14g00959 Car-Chr14:5910123 Car17g00984 Car-Chr17:7900030 2.07E-103 dispersed
Car17g00984 Car-Chr17:7900030 Car19g00342 Car-Chr19:5283540 4.57E-71 dispersed
Car17g00984 Car-Chr17:7900030 Car08g00380 Car-Chr8:2458315 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00984 K02210 - csv:101219064 1391.33