Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g01008 | ATGGCGACGAGGAATCGAACTGCACAGTTTAGAAGGCACAGGGACGCCGTGAAGAGCGTCCGTGCGCCTTTATCTTCCTCGGCAGCTGGTTCGAGCGGACCGGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGCTCTTCAGATTACGCTCCTCTTAGCACAGAAGATCCAGGACCTTCGAGCAGTGATGCATTGATGGTGGGTCTGCCTCCAGCTTGGGTGGATGATTCTGAAGAAATAACTGTTAATATACACCAAATTCGTAGGAAGATGGCAGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATCAGAATACGATTGAGGCGCTTACGCAAGAAATTACTAATCTTTTGAAAGCCTCTGAGAAGAGGTTGAAGAGAGTTTCTTGTACTGGGTCTTCAGAAGATATTGGCATCAGAAAAAATGTACAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCAATGGATCTTCGTAGAAGACAGTCAATGTATCTGAAACATCTGCAGCAGCAAAAGGAGGGGCATGATGGAATTGATTTGGAGATAAATTTGAATGGAAGCAGAACTCTACAGGATGATGACCGATATGATGAATTTGGAACCAATGAACACCAAACGATGACATTTGGAATGGATGCGCAGCATATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTGAAATCAGTGAATGAACTCGCCCAAATCATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGCTTCAGTTGAAGAGGGCTATAAGCAGCTTCAAAAGGCAGAGAAGAGTCAGAAGAATGGAGGAATGGTGAAGTGTGCAACGGTGCTGGTTATTATGTGTTTCATAATGCTGGTTCTGTTGATACTGAAGGAGATAATTATGTAA | 969 | 43.24 | MATRNRTAQFRRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSDYAPLSTEDPGPSSSDALMVGLPPAWVDDSEEITVNIHQIRRKMAELVKAHSKALMPSFADGKEDQNTIEALTQEITNLLKASEKRLKRVSCTGSSEDIGIRKNVQRSLATELQNLSMDLRRRQSMYLKHLQQQKEGHDGIDLEINLNGSRTLQDDDRYDEFGTNEHQTMTFGMDAQHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAASVEEGYKQLQKAEKSQKNGGMVKCATVLVIMCFIMLVLLILKEIIM | 322 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 8021846 | 8025344 | - | Carg07148-RA | Car17g01008 | 165380 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g01008 | 322 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Car17g01008 | 322 | Pfam | SNARE domain | 262 | 314 | IPR000727 | - | |
| Car17g01008 | 322 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 226 | 288 | IPR000727 | - | |
| Car17g01008 | 322 | ProSitePatterns | Syntaxin / epimorphin family signature. | 232 | 271 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00589 | Car-Chr5:3439963 | Car17g01008 | Car-Chr17:8021846 | 1.09E-06 | dispersed | |
| Car12g00284 | Car-Chr12:1869253 | Car17g01008 | Car-Chr17:8021846 | 1.95E-06 | dispersed | |
| Car12g01004 | Car-Chr12:10021081 | Car17g01008 | Car-Chr17:8021846 | 1.16E-138 | dispersed | |
| Car17g01008 | Car-Chr17:8021846 | Car13g00552 | Car-Chr13:7435500 | 3.90E-06 | dispersed | |
| Car17g01008 | Car-Chr17:8021846 | Car05g00958 | Car-Chr5:9180189 | 5.56E-148 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g01008 | K08489 | - | csv:101204192 | 551.206 |