Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01016 ATGTACGGCCTGAGAAGCAGAGCTCAAAGCTCTTCAAATCCCACCGCCTCCATTTCCGCCATTTTCACCTTCTTTTCCGTTCTTTTCCTTTGCTCCTTCAAACCCATTTCTTCAAATCCCCAAACCCACCAAACCGCTCGATCCCTTTGCAATGGCACTCTGTTTCCAAATCTCTGTTTCTCAAAGCTCTCCTCTTTTCCCCAACTCGCCTCCCTCTCGCCGGAAAAGCTCGCCGGCTCCGCCCTCAACTTCACCAACGACGAGGTTCACGGTGCCTACGCCAATTGCTCCAAGCTCAAGACTCTCTTCTACGGAGGCCTGAATCCCACCGACCGCCGCGCCCTCGATGACTGCCTTGAGCTTCTCGATGACAGCATTGCCGAACTCCAAACTTCGATTTACGATCTTTCCCCGTCGCAGTCCGCCGCCCGCCACTCTCACGATCTGTTGACGTTGGTCAGCGCCGCCATGACTAACCACCGGACTTGTCTTGATGGGTTTTATAATAGTTCCGGGAATGTCAGGAAACGGGTGGAGCTGTATTTGGGGAAAATCGAACAGCATTTGAGTATTGATTTGGCTATGCTGAAGAAAATCCCTGGAGTTAAACGGGCTGCCACGGCGGAAGAGGTGTTGCCGGAGTATGGGGCGGTGAGAGGTGGGTTTCCGATGTGGGTTTCGGTGAAGGATCGGAGATTGTTGCAGGCGGCGGTGAATGAAACGAAGTTCAATTTGGTGGTGGCGAAGGATGGCTCCGGGAATTTCACCACCGTCGGCGAGGCTGTCGCCGCCGCTCCAAATTCGAGCACGACCAGGTTTGTAATATACATAAAAGCAGGGGCCTATTTTGAGAATGTGGAAATAGAACGGAAAAAGACAAACTTGATGTTCGTCGGCGACGGGATCGGCAAGACACTGATAAAGGCCGACCGGAATGTCGTCGACGGCTGGACTACCTTCCGATCAGCCACCGTCGCGGCTGTCGGCAATGGGTTCATAGCGAAAGGCATAACATTCGAAAACTTTGCTGGTCCGAGCAAGCACCAAGCCGTAGCCTTCCGAAGCAACTCCGACTTCTCAGCATTTTACCAATGCAGCTTCATCGGCTATCAAGACACTCTCTACGTCCATTCTCTCCGTCAATTCTACCGCGAATGCGACGTCTATGGCACCATCGACTTCATCTTCGGTAACGCAGCAGTCGTCTTCCAAAACTGCAATCTATATGCTCGAAAACCCAACTCAAACCAACGCAACATATTCACAGCTCAAGGTCGTGAGGATCCTAACCAAAATACCGGAATCTCAATCCTCAACTGCAAGGTTGAAGCCGCTTCTGATTTGCTCCCAGTTCTTCCCTCTTTTAGAACTTACTTGGGTCGACCCTGGAAGCTCTACTCGAGGACGGTTTTTCTCAAGTCATTTATTGGGCAGTTGGTTGAGCCGGTCGGATGGCTTGAGTGGAGTGGGACATTCGCATTAGATACTTTGTATTATGGGGAGTATTTGAATCGTGGACCTGGTTCTAATACAACTGGACGAGTTACTTGGCCAGGTTATCGGGTCATTACTAACTCAACAGAAGCGAGTCAGTTTACAGTGGAGGCGTTTATACAGGGTAGTGAGTGGCTGAACTCGACCGAGATTCCTTTCTTCTCTGGTTTGGCTTGA 1671 50.99 MYGLRSRAQSSSNPTASISAIFTFFSVLFLCSFKPISSNPQTHQTARSLCNGTLFPNLCFSKLSSFPQLASLSPEKLAGSALNFTNDEVHGAYANCSKLKTLFYGGLNPTDRRALDDCLELLDDSIAELQTSIYDLSPSQSAARHSHDLLTLVSAAMTNHRTCLDGFYNSSGNVRKRVELYLGKIEQHLSIDLAMLKKIPGVKRAATAEEVLPEYGAVRGGFPMWVSVKDRRLLQAAVNETKFNLVVAKDGSGNFTTVGEAVAAAPNSSTTRFVIYIKAGAYFENVEIERKKTNLMFVGDGIGKTLIKADRNVVDGWTTFRSATVAAVGNGFIAKGITFENFAGPSKHQAVAFRSNSDFSAFYQCSFIGYQDTLYVHSLRQFYRECDVYGTIDFIFGNAAVVFQNCNLYARKPNSNQRNIFTAQGREDPNQNTGISILNCKVEAASDLLPVLPSFRTYLGRPWKLYSRTVFLKSFIGQLVEPVGWLEWSGTFALDTLYYGEYLNRGPGSNTTGRVTWPGYRVITNSTEASQFTVEAFIQGSEWLNSTEIPFFSGLA 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8060470 8063435 + Carg07156-RA Car17g01016 165388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01016 556 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Car17g01016 556 Pfam Plant invertase/pectin methylesterase inhibitor 47 194 IPR006501 GO:0004857
Car17g01016 556 Pfam Pectinesterase 244 540 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00926 Car-Chr2:6557197 Car17g01016 Car-Chr17:8060470 7.37E-52 dispersed
Car06g00148 Car-Chr6:906139 Car17g01016 Car-Chr17:8060470 8.21E-148 dispersed
Car07g00252 Car-Chr7:1371909 Car17g01016 Car-Chr17:8060470 1.83E-150 dispersed
Car13g00788 Car-Chr13:8697078 Car17g01016 Car-Chr17:8060470 1.22E-18 dispersed
Car13g00789 Car-Chr13:8754916 Car17g01016 Car-Chr17:8060470 7.29E-92 dispersed
Car15g00913 Car-Chr15:5737801 Car17g01016 Car-Chr17:8060470 8.04E-102 dispersed
Car15g00960 Car-Chr15:7028201 Car17g01016 Car-Chr17:8060470 2.40E-168 dispersed
Car17g00613 Car-Chr17:5775345 Car17g01016 Car-Chr17:8060470 9.74E-168 dispersed
Car17g01016 Car-Chr17:8060470 Car18g01228 Car-Chr18:11816241 4.34E-160 dispersed
Car20g00959 Car-Chr20:11106134 Car17g01016 Car-Chr17:8060470 8.11E-116 dispersed
Car17g01015 Car-Chr17:8052657 Car17g01016 Car-Chr17:8060470 9.15E-137 tandem
Car15g00914 Car-Chr15:5738873 Car17g01016 Car-Chr17:8060470 3.89E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01016 K01051 - csv:101205557 987.252