Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01130 ATGGATTTAACAAATGGGGGCAGGGCCGGCAAAGCTCCGATAGCGAATAATTCCGGTACCGAAGTAGCTGATATTGTTTCTGGTAAGTCTAGCAATCCCCAAGAGAATGATTTGGGATCAAAGTTGGGGATAGGAAGCAAAAGCAACAAGGATATGGTATTTCGTGCTGATAAGATCGATTTCAAGAGCTGGGATATTCAGCTGGATAGACACTTGAGCAGGGCATGGTCAAGGGACAGGGAAGTGCCTGCCAAAAAGGAAGAATGGGAGATTAACTTGTCTAAACTTGATATCAGATATGTTAAAGCTCATGGCACTTATGGTACTATTTACAGAGGAAACTATGATGGCAAAGATGCTGCAGTGAAAGTGCTTGATTGGGGGGAGGATGGTGTTTCCTCCGTTGCTGAAATTGCTGCTCTTAGAGCATCTTTTCGCCAGGAAGTTGCTGTATGGCATAAGCTTGACCATCCCAATGTTGCCAAGTTTTATGGAGCTTCAATGGGGACCTCCAACCTTAAAATCCCTCCCAAAAGCCCATCACTTGACAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTATCTTCCAGGTGGAACGCTAAAGGGCTTTTTAATCAAAAACAGGAAAAAGAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTGGATCTTTCTAGAGGTTTGAGTTATCTACACTCCAAAAAGATTGTACACCGTGATATTAAAACGGAGAACGTGCTGTTCGATGCTCAGAAGACTCTCAAAATTGTTGATTTTGGCGTTGCTCGAGTCGAAGCGCAGAATCCAAGGGATATGACTGGAGAAACTGGCACACTCGGTTACATGGCTCCCGAGGTCCTTGATGGTAAGCCTTATAATCGAAAATGTGATGTGTACAGTTTTGGTATATGTTTGTGGGAAACATATTGCTGCGATATGCCTTACCCCGATCTCAGTTTTGCTGAAATTTCATCTGCAGTTGTACGCCAGAATTTACGACCCGAAATCCCTAGATGCTGTCCGAGTTCATTCGCAAGTATCATGAAAAGATGTTGGGATGCAAATCCAGAAAGGCGACCCGACATGGACGAGGTCGTAAACTTGTTGGAAGCCATCGATACAAGCAAGGGAGGTGGCATGATTTCTAAAGATCAGGCTACTCGTTGTTTTTGTTTCGGCATACCTCGTGAGTTTCTGAGAAATGCCGGTGGCACCGCCATTATTGATGGTGGTTTGGCCACGGAGCTGGAACGGCATGGCGCCGACCTCAACGATCCTCTTTGGAGCGCCACATGTCTCCTCACTTCCCCTCACCTGATTCACAAAGCCACCATCCAGGGATTTGAGTCCAAAGGACTTTCAAGAGATGAAAGTGAATCATTGTTAAGAAAGAGTGTGGAGATCGCCTGTTCAGCACGGGATAATTATTGTGATAGGTGTAATACAAGCATTCCTGATGAGACTCCAGATGGTAAAATTTTCAAAAAACGTCAGATACTTGTAGCAGCTTCAGTGGGGAGCTATGGAGCATATTTGGCTGATGGGTCCGAGTACAGTGGTAATTATGGTGACAGTATTACACTTGAGGCTTTGAAAGAATTCCATAGGAGAAGGGTAAAAGTGCTTGCAGAGTCAGGGGCTGACCTGATTGCATTTGAAACCATTCCCAATAAACTTGAAGCTAAGGCATATGCAGAACTCTTGGAGGAAGAAAATATAAGTGTTCCTGCATGGTTTGCTTTCAACTCGAAGGATGGTATCCATGTAGTTAGTGGTGATTCTTACTCTGAATGTGTGTCGATTGCAGAATCGTGCAGAAATATTGTGGCAGTGGGAATCAACTGTACACCGCCTAGGTTTATTCATGGTCTAATATCTTCCATTAAGAAGGTCTCTACAAAGCCTATAGTGATATATCCAAATAGCGGTGAAAGTTATGATGCTGATCTAAAGGAATGGGTGCAAAATACTGGGGTCTCTGATGATGATTTTGTATCATATGTAAACAAATGGTGTGAGGTCGGGGCGTCGTTAGTCGGAGGTTGCTGCCGAACCACTCCAGATACAATCAGAGCTATTTACAGGACCCTTTCAAAGAGAGAAGAAAACCATTCTCTATATGTCTCTGTTTTCCCGAGTCTCCCTGCCAGTAGACCATGA 2175 44.0 MDLTNGGRAGKAPIANNSGTEVADIVSGKSSNPQENDLGSKLGIGSKSNKDMVFRADKIDFKSWDIQLDRHLSRAWSRDREVPAKKEEWEINLSKLDIRYVKAHGTYGTIYRGNYDGKDAAVKVLDWGEDGVSSVAEIAALRASFRQEVAVWHKLDHPNVAKFYGASMGTSNLKIPPKSPSLDSNQSFPSRACCVVVEYLPGGTLKGFLIKNRKKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLFDAQKTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEISSAVVRQNLRPEIPRCCPSSFASIMKRCWDANPERRPDMDEVVNLLEAIDTSKGGGMISKDQATRCFCFGIPREFLRNAGGTAIIDGGLATELERHGADLNDPLWSATCLLTSPHLIHKATIQGFESKGLSRDESESLLRKSVEIACSARDNYCDRCNTSIPDETPDGKIFKKRQILVAASVGSYGAYLADGSEYSGNYGDSITLEALKEFHRRRVKVLAESGADLIAFETIPNKLEAKAYAELLEEENISVPAWFAFNSKDGIHVVSGDSYSECVSIAESCRNIVAVGINCTPPRFIHGLISSIKKVSTKPIVIYPNSGESYDADLKEWVQNTGVSDDDFVSYVNKWCEVGASLVGGCCRTTPDTIRAIYRTLSKREENHSLYVSVFPSLPASRP 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8673176 8682018 - Carg07270-RA Car17g01130 165502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01130 724 ProSiteProfiles Homocysteine-binding domain profile. 399 702 IPR003726 -
Car17g01130 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Car17g01130 724 Pfam Homocysteine S-methyltransferase 454 700 IPR003726 -
Car17g01130 724 Pfam Protein tyrosine and serine/threonine kinase 104 374 IPR001245 GO:0004672|GO:0006468
Car17g01130 724 MobiDBLite consensus disorder prediction 1 43 - -
Car17g01130 724 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g01130 724 MobiDBLite consensus disorder prediction 20 43 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00123 Car-Chr10:582369 Car17g01130 Car-Chr17:8673176 1.43E-67 dispersed
Car11g01379 Car-Chr11:11265175 Car17g01130 Car-Chr17:8673176 2.04E-176 dispersed
Car17g00196 Car-Chr17:1172873 Car17g01130 Car-Chr17:8673176 1.25E-149 dispersed
Car17g01130 Car-Chr17:8673176 Car18g00940 Car-Chr18:10081938 3.61E-103 dispersed
Car14g01563 Car-Chr14:12783184 Car17g01130 Car-Chr17:8673176 1.68E-85 wgd
Car17g01130 Car-Chr17:8673176 Car06g01199 Car-Chr6:8767005 0 wgd
Car17g01130 Car-Chr17:8673176 Car08g00296 Car-Chr8:1895137 8.73E-34 wgd
Car17g01130 Car-Chr17:8673176 Car08g01014 Car-Chr8:6942745 1.70E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89487 PF07714 PK_Tyr_Ser-Thr 8.20E-55 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01130 - K01968 csv:101207522 737.643