Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car17g01144 | ATGGCGAACAATCATTCCGAGACTCCCTCCGATGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTCGGTTCGGCGGAGCAAGGGTTAGCTGGAACCGACGGCGGATTGGCAGGAGCTGCTGCGGCGGCGGCGGCGGCTCACGGTCAGGCTCCGATGATGCTTCAACTTAGCTCCGGCGATGGAGGTGGCCACATCTCTACGATTGGAAGTGGAAGTGTCGGTGGTGCAGGGTTCCATGGCGGAACCCCTTTTCCTTTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGGAAGAGGTATTGTGGTGAGGTTGTTGATGTTCGAGCTTCATCTGTGAAAAATGTTTATCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCACCGCATCCACCAACGATGCGCCCTAGGGTACGAGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGAATTGCAGAGAGAATCCGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGACGGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTTCTACGTCTCCAAGTAAAGGTTTTAAGCATGAGTAGATTGGGTGGAGCTGGTGCGGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAGGGTGGTAGGAACCAACCTGCGTGGGAGAAGTGGTCGAACGATGGTACCGAGAGACAAGTTGCGAAGCTTATGGAAGAAAACGTGGGTTCTGCGATGCAATTCCTTCAATCGAAGGCACTCTGCATCATGCCCATCTCATTGGCTTCGGCGATTTATCACACGCAACCGCCCGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAATCCTCCTCCATAG | 936 | 52.24 | MANNHSETPSDDFLEQILGISPFGSAEQGLAGTDGGLAGAAAAAAAAHGQAPMMLQLSSGDGGGHISTIGSGSVGGAGFHGGTPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASSVKNVYQGQQMHATMGAAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGSAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP | 311 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8792189 | 8795318 | + | Carg07284-RA | Car17g01144 | 165516 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car17g01144 | 311 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 155 | 204 | IPR011598 | GO:0046983 | |
Car17g01144 | 311 | MobiDBLite | consensus disorder prediction | 135 | 159 | - | - | |
Car17g01144 | 311 | Pfam | Helix-loop-helix DNA-binding domain | 160 | 204 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car12g01123 | Car-Chr12:10941072 | Car17g01144 | Car-Chr17:8792189 | 1.58E-48 | dispersed | |
Car17g01144 | Car-Chr17:8792189 | Car06g01366 | Car-Chr6:9828555 | 6.69E-22 | dispersed | |
Car12g00819 | Car-Chr12:7854264 | Car17g01144 | Car-Chr17:8792189 | 1.35E-94 | transposed | |
Car17g01144 | Car-Chr17:8792189 | Car08g00276 | Car-Chr8:1740022 | 2.65E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5095 | PF00010 | HLH | 1.20E-07 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car17g01144 | - | - | csv:101218718 | 498.819 |