Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01144 ATGGCGAACAATCATTCCGAGACTCCCTCCGATGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTCGGTTCGGCGGAGCAAGGGTTAGCTGGAACCGACGGCGGATTGGCAGGAGCTGCTGCGGCGGCGGCGGCGGCTCACGGTCAGGCTCCGATGATGCTTCAACTTAGCTCCGGCGATGGAGGTGGCCACATCTCTACGATTGGAAGTGGAAGTGTCGGTGGTGCAGGGTTCCATGGCGGAACCCCTTTTCCTTTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGGAAGAGGTATTGTGGTGAGGTTGTTGATGTTCGAGCTTCATCTGTGAAAAATGTTTATCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCACCGCATCCACCAACGATGCGCCCTAGGGTACGAGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGAATTGCAGAGAGAATCCGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGACGGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTTCTACGTCTCCAAGTAAAGGTTTTAAGCATGAGTAGATTGGGTGGAGCTGGTGCGGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAGGGTGGTAGGAACCAACCTGCGTGGGAGAAGTGGTCGAACGATGGTACCGAGAGACAAGTTGCGAAGCTTATGGAAGAAAACGTGGGTTCTGCGATGCAATTCCTTCAATCGAAGGCACTCTGCATCATGCCCATCTCATTGGCTTCGGCGATTTATCACACGCAACCGCCCGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAATCCTCCTCCATAG 936 52.24 MANNHSETPSDDFLEQILGISPFGSAEQGLAGTDGGLAGAAAAAAAAHGQAPMMLQLSSGDGGGHISTIGSGSVGGAGFHGGTPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASSVKNVYQGQQMHATMGAAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGSAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8792189 8795318 + Carg07284-RA Car17g01144 165516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01144 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Car17g01144 311 MobiDBLite consensus disorder prediction 135 159 - -
Car17g01144 311 Pfam Helix-loop-helix DNA-binding domain 160 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01123 Car-Chr12:10941072 Car17g01144 Car-Chr17:8792189 1.58E-48 dispersed
Car17g01144 Car-Chr17:8792189 Car06g01366 Car-Chr6:9828555 6.69E-22 dispersed
Car12g00819 Car-Chr12:7854264 Car17g01144 Car-Chr17:8792189 1.35E-94 transposed
Car17g01144 Car-Chr17:8792189 Car08g00276 Car-Chr8:1740022 2.65E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5095 PF00010 HLH 1.20E-07 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01144 - - csv:101218718 498.819