Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01158 ATGGATCAAACACAGATGTGGGTTCATGATCAAAATCAACAAGAACAAGAACAGCAACATCAAAATCATCAAATTTTTCTGTCGGATAATGATGATGATGCTTTGATGTTCTACTCTGATTTCCCTCCCTTGCCGGATTTTCCTTGCATGTCGTCTTCTTCGTCGTCTACTCCTGCTCCGGTCAAGCCCACCGTGTCGTTGTCGTCCTCGTCGTCCACTTCCTCCTCCTCCTCTGCCACTTCATGGGCAGTTTTGAAATCTGATGCTGATGAAATTGCTGAAGAAATCAGAATTAATGATGACAATTCCGCCGCCGCCGCCGTGTCGTCCCCTACGGCGGTGAAAACTGAGTTTAACGGCGGAGATTGTACGGATGACATGATGATGGAGACATTTGGATACATGGATTTACTTGAAGATAGCAATGAGTTTTTCGATCCGACGTGTATTTTTCAGAACGAACAACAACAACAACAACAACTACGAGACCCTTTAGAGGATTTGCAATTGGAAAGCTTTGAAGAAGTGGAAATGGAGGATTCGATGATGATGCATGGCGGTGAGAGTAATGATAATGGAGGAAAGCAAAACGTCGCCGCCGCCGCGGCGGCGGCGGAGGAGGAGGATATGGCGAAGGTGTTTTTGGAGTGGCTTAGGAGTAATAGAGAGACGGTTTCTGCTGATGATTTGAGAAATGTTAGGATCAAAAAAGCTACTATTGAAAGCGCCGCCCGCCGCCTCGGCGGCGGCAAGGAGGGAATGAAACAGCTTTTGAAGCTTGTTCTTGAATGGGTTCAAACCAATCATCTTCACAAGAGGAAATTCAAAGAGATCAATGAAAATGAAGCCAATTTGATAGGGTTTCAAAACCCTAATTCCTCCGGCCACCCCTGGATCCAGACACCACCGCCATTACCACCTCCGCCGTTGTATTCTCCACCGATTCTTGGGTATGTCCAAGGTGGTGGTGGGGAAGCGTATGGCGGTGGCCGCGGTTATTCCGATCATTACCAATTACTCGACTCCTCATTGTCCTGGAGTAATAGTAACAGTAATAGTAATAGTAATTTGCCAGGACAGTTTGGACTGCCCCCGTCGCATTTCAACTCGTTTGTTGATAATTTTGTGGCTGGGCCGCCTTTGCCACCGCCGCAACCACAAGGTTTCACGGCAGGGTACGGTAGGGGGCAGCAGTACCCTTATATGGGTCAGTATTTTCAAGCGCAGGGCGGGGATAATGGTTTGGTTAGGTTGGATTCATCGGCGACAAAGGAGGCTCGAAAGAAGCGAATGGCAAGGCAGCGGAGATTCTCCGCCCACCACCGCCACAATCACGGTGGACACCACGGCAACCACCACCACCATAGCAACAGCCACCAAAATCAGATGAATCCTAATGCTACAGATCATTGCAACATGGCTACAACTTCTCAGCCAAATGCTGGAAACTGGGTCTACTGGCCATCCTCCACCGATGTGGTTCCAGCCGATTCACCGGTGCACGTAGTCAATCGGTCTAATTCTTCCCTGCAAAACCAGCCGTATCCTCCCCGGATCCAATCGGACCGACGACAGGGATGGAAACCAGAGAAAAATTTAAGGTTTCTTTTACAAAAAGTATTGAAGCAAAGCGATGTGGGAAATCTGGGGAGAATTGTATTGCCAAAGAAAGAAGCAGAAAGCCATCTCCCAGAATTGGAGGCAAGAGATGGGATTTCCATAGCCATGGAAGACATTGGAACTTCAAGAGTTTGGAATATGCGTTATAGATATTGGCCAAACAACAAAAGCAGAATGTATCTCCTTGAAAATACAGGCGACTTTGTGAGAGCCAATGGACTTCAAGAAGGAGACTTCATTGTCATCTACTCCGACGTCAAGTGCGGGAAATATATGATTCGAGGAGTGAAAGTACGGCAACCGGGGTCGAAACCCGATAGCAAGAGGGGAGGAAAATCGCAAAGAAGCCATTCGACTGCCGGTGTGAATGCCAACGGCTTGTCATCTTCACCGCCGACCCCCGCCACCCCGAGGAGGCTCTGA 2043 48.36 MDQTQMWVHDQNQQEQEQQHQNHQIFLSDNDDDALMFYSDFPPLPDFPCMSSSSSSTPAPVKPTVSLSSSSSTSSSSSATSWAVLKSDADEIAEEIRINDDNSAAAAVSSPTAVKTEFNGGDCTDDMMMETFGYMDLLEDSNEFFDPTCIFQNEQQQQQQLRDPLEDLQLESFEEVEMEDSMMMHGGESNDNGGKQNVAAAAAAAEEEDMAKVFLEWLRSNRETVSADDLRNVRIKKATIESAARRLGGGKEGMKQLLKLVLEWVQTNHLHKRKFKEINENEANLIGFQNPNSSGHPWIQTPPPLPPPPLYSPPILGYVQGGGGEAYGGGRGYSDHYQLLDSSLSWSNSNSNSNSNLPGQFGLPPSHFNSFVDNFVAGPPLPPPQPQGFTAGYGRGQQYPYMGQYFQAQGGDNGLVRLDSSATKEARKKRMARQRRFSAHHRHNHGGHHGNHHHHSNSHQNQMNPNATDHCNMATTSQPNAGNWVYWPSSTDVVPADSPVHVVNRSNSSLQNQPYPPRIQSDRRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAESHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGSKPDSKRGGKSQRSHSTAGVNANGLSSSPPTPATPRRL 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8934830 8937314 + Carg25547-RA Car17g01158 165530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01158 680 MobiDBLite consensus disorder prediction 457 476 - -
Car17g01158 680 MobiDBLite consensus disorder prediction 1 25 - -
Car17g01158 680 Pfam B3 DNA binding domain 538 634 IPR003340 GO:0003677
Car17g01158 680 MobiDBLite consensus disorder prediction 438 476 - -
Car17g01158 680 ProSiteProfiles B3 DNA-binding domain profile. 537 639 IPR003340 GO:0003677
Car17g01158 680 MobiDBLite consensus disorder prediction 49 81 - -
Car17g01158 680 MobiDBLite consensus disorder prediction 1 27 - -
Car17g01158 680 MobiDBLite consensus disorder prediction 438 456 - -
Car17g01158 680 MobiDBLite consensus disorder prediction 654 680 - -
Car17g01158 680 MobiDBLite consensus disorder prediction 639 680 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01141 Car-Chr3:9162474 Car17g01158 Car-Chr17:8934830 9.02E-33 dispersed
Car04g02179 Car-Chr4:17723333 Car17g01158 Car-Chr17:8934830 9.09E-40 dispersed
Car15g00731 Car-Chr15:4079284 Car17g01158 Car-Chr17:8934830 8.32E-38 dispersed
Car17g01158 Car-Chr17:8934830 Car08g00053 Car-Chr8:324844 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5099 PF02362 B3 1.10E-17 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01158 - - cmax:111488128 1119.38