Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car17g01171 | ATGAGTTGCTTTCCATGTTTTTGGTATCGTGGGAAAGCAACGAGAAGAACAAAGAGTGATCGAAGGGAACTGTCTGTTTCGTTGCATTCTCGTAGTCTTAAACAACAACAACATCATCATCATCATGCTCCTCCTCCTCCTCCTCCTCCACGCTCTACGCCTGCAGAAAATCCAAAAGGAAACCAGGTGCAAAAGGAAGCAGAGAAAGATATTGAGATTGGGGAAAAGAATAACATTCAAGCACAAACCTTTACATTTAGAGAGCTCGCCACGGCCACAAAGAATTTCCGTCGAGAATGTCTCATCGGCGAGGGAGGGTTCGGGAGAGTTTACAAAGGCAAACTCGATAAAACTAACCAGGTTATAGCAGTGAAGCAGCTAGATAGAAATGGAATGCAAGGGAACAAAGAGTTTCTTGTGGAGGTTTTGATGCTAAGCCTTTTGCACCATCAAAACCTTGTCAATCTCATTGGCTATTGTGCAGATGGTGATCAAAGACTCTTAGTCTATGAGTACATGCCTTTGGGATCCCTCGAAGATCATCTTCTTGGCAAGTATCCAAAAACGAACGTTCCAGCTGATACAAAGGCATTGGATTGGGCAACAAGGTTGAAAGTAGCGTTGGGAGCAGCAAAAGGATTAGAATACTTGCACGACAAAGCCAACCCACCAGTGATATACAGAGATTTGAAGGCATCAAACATTCTATTAGACAATGATTTCAATGCAAAGCTGTCGGATTTTGGTCTCGCAAAGCTCGGGCCTGTCGGGGACAATTCCCATGTTTCCTCCAGAATTATGGGAACCTACGGATATTGTGCTCCCGAGTATCAAAAAACCGGCCAGCTCACGCTCAAATCCGACGTCTACAGCTTTGGCGTCGTCTTGTTGGAGCTCATCACCGGGCAGAGAGTCATTGACAACGCTCGTCCAGTTAAACAGCAAAATTTGGTCGCTTGGGCATACCCAATATTCAAGGAACCAGCGAGATTCAAGGAGCTGGCCGATCCTCTCCTTGGGGGAGACTTCCCAGTGAGGGCTTTGAACCAAGCAGTCGCGGTAGCCGCCATGTGCCTGCACGAGGAGGCAGCGGCACGCCCGTTGATCAGCGACGTCGTGACCGCTCTCAGCTTCTTGGGCGCAGAAGCCACGCAATCATCGCCATCGTCGTATGGCGATGTCCCCTCACCACTTAATGATCACAGTCCAATAAACCCATCCAAACCCAAACCCAAACCCAGAGACTATCTTCACGACGACAACGAAACGGCCGAGGCGCGCCAACGAGCGGTGGCCGAAGCCATCGAATGGGGCTCCTCCTCCAGGCAAAACGCCGCCGCTTCGCGCCCCCAAAGTTGTTCTTCCTTGTGA | 1371 | 49.16 | MSCFPCFWYRGKATRRTKSDRRELSVSLHSRSLKQQQHHHHHAPPPPPPPRSTPAENPKGNQVQKEAEKDIEIGEKNNIQAQTFTFRELATATKNFRRECLIGEGGFGRVYKGKLDKTNQVIAVKQLDRNGMQGNKEFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLGKYPKTNVPADTKALDWATRLKVALGAAKGLEYLHDKANPPVIYRDLKASNILLDNDFNAKLSDFGLAKLGPVGDNSHVSSRIMGTYGYCAPEYQKTGQLTLKSDVYSFGVVLLELITGQRVIDNARPVKQQNLVAWAYPIFKEPARFKELADPLLGGDFPVRALNQAVAVAAMCLHEEAAARPLISDVVTALSFLGAEATQSSPSSYGDVPSPLNDHSPINPSKPKPKPRDYLHDDNETAEARQRAVAEAIEWGSSSRQNAAASRPQSCSSL | 456 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8994756 | 8998691 | + | Carg25533-RA | Car17g01171 | 165543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car17g01171 | 456 | MobiDBLite | consensus disorder prediction | 384 | 401 | - | - | |
Car17g01171 | 456 | MobiDBLite | consensus disorder prediction | 384 | 456 | - | - | |
Car17g01171 | 456 | ProSiteProfiles | Protein kinase domain profile. | 96 | 379 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Car17g01171 | 456 | ProSitePatterns | Protein kinases ATP-binding region signature. | 102 | 125 | IPR017441 | GO:0005524 | |
Car17g01171 | 456 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 225 | 237 | IPR008271 | GO:0004672|GO:0006468 | |
Car17g01171 | 456 | MobiDBLite | consensus disorder prediction | 407 | 429 | - | - | |
Car17g01171 | 456 | MobiDBLite | consensus disorder prediction | 437 | 456 | - | - | |
Car17g01171 | 456 | Pfam | Protein tyrosine and serine/threonine kinase | 101 | 372 | IPR001245 | GO:0004672|GO:0006468 | |
Car17g01171 | 456 | MobiDBLite | consensus disorder prediction | 16 | 67 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car17g01171 | Car-Chr17:8994756 | Car17g01306 | Car-Chr17:9830000 | 1.74E-171 | dispersed | |
Car17g01171 | Car-Chr17:8994756 | Car08g00059 | Car-Chr8:350957 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
89491 | PF07714 | PK_Tyr_Ser-Thr | 4.90E-46 | CL0016 | Car | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car17g01171 | - | - | csv:101222872 | 714.916 |