Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01171 ATGAGTTGCTTTCCATGTTTTTGGTATCGTGGGAAAGCAACGAGAAGAACAAAGAGTGATCGAAGGGAACTGTCTGTTTCGTTGCATTCTCGTAGTCTTAAACAACAACAACATCATCATCATCATGCTCCTCCTCCTCCTCCTCCTCCACGCTCTACGCCTGCAGAAAATCCAAAAGGAAACCAGGTGCAAAAGGAAGCAGAGAAAGATATTGAGATTGGGGAAAAGAATAACATTCAAGCACAAACCTTTACATTTAGAGAGCTCGCCACGGCCACAAAGAATTTCCGTCGAGAATGTCTCATCGGCGAGGGAGGGTTCGGGAGAGTTTACAAAGGCAAACTCGATAAAACTAACCAGGTTATAGCAGTGAAGCAGCTAGATAGAAATGGAATGCAAGGGAACAAAGAGTTTCTTGTGGAGGTTTTGATGCTAAGCCTTTTGCACCATCAAAACCTTGTCAATCTCATTGGCTATTGTGCAGATGGTGATCAAAGACTCTTAGTCTATGAGTACATGCCTTTGGGATCCCTCGAAGATCATCTTCTTGGCAAGTATCCAAAAACGAACGTTCCAGCTGATACAAAGGCATTGGATTGGGCAACAAGGTTGAAAGTAGCGTTGGGAGCAGCAAAAGGATTAGAATACTTGCACGACAAAGCCAACCCACCAGTGATATACAGAGATTTGAAGGCATCAAACATTCTATTAGACAATGATTTCAATGCAAAGCTGTCGGATTTTGGTCTCGCAAAGCTCGGGCCTGTCGGGGACAATTCCCATGTTTCCTCCAGAATTATGGGAACCTACGGATATTGTGCTCCCGAGTATCAAAAAACCGGCCAGCTCACGCTCAAATCCGACGTCTACAGCTTTGGCGTCGTCTTGTTGGAGCTCATCACCGGGCAGAGAGTCATTGACAACGCTCGTCCAGTTAAACAGCAAAATTTGGTCGCTTGGGCATACCCAATATTCAAGGAACCAGCGAGATTCAAGGAGCTGGCCGATCCTCTCCTTGGGGGAGACTTCCCAGTGAGGGCTTTGAACCAAGCAGTCGCGGTAGCCGCCATGTGCCTGCACGAGGAGGCAGCGGCACGCCCGTTGATCAGCGACGTCGTGACCGCTCTCAGCTTCTTGGGCGCAGAAGCCACGCAATCATCGCCATCGTCGTATGGCGATGTCCCCTCACCACTTAATGATCACAGTCCAATAAACCCATCCAAACCCAAACCCAAACCCAGAGACTATCTTCACGACGACAACGAAACGGCCGAGGCGCGCCAACGAGCGGTGGCCGAAGCCATCGAATGGGGCTCCTCCTCCAGGCAAAACGCCGCCGCTTCGCGCCCCCAAAGTTGTTCTTCCTTGTGA 1371 49.16 MSCFPCFWYRGKATRRTKSDRRELSVSLHSRSLKQQQHHHHHAPPPPPPPRSTPAENPKGNQVQKEAEKDIEIGEKNNIQAQTFTFRELATATKNFRRECLIGEGGFGRVYKGKLDKTNQVIAVKQLDRNGMQGNKEFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLGKYPKTNVPADTKALDWATRLKVALGAAKGLEYLHDKANPPVIYRDLKASNILLDNDFNAKLSDFGLAKLGPVGDNSHVSSRIMGTYGYCAPEYQKTGQLTLKSDVYSFGVVLLELITGQRVIDNARPVKQQNLVAWAYPIFKEPARFKELADPLLGGDFPVRALNQAVAVAAMCLHEEAAARPLISDVVTALSFLGAEATQSSPSSYGDVPSPLNDHSPINPSKPKPKPRDYLHDDNETAEARQRAVAEAIEWGSSSRQNAAASRPQSCSSL 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8994756 8998691 + Carg25533-RA Car17g01171 165543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01171 456 MobiDBLite consensus disorder prediction 384 401 - -
Car17g01171 456 MobiDBLite consensus disorder prediction 384 456 - -
Car17g01171 456 ProSiteProfiles Protein kinase domain profile. 96 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g01171 456 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Car17g01171 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Car17g01171 456 MobiDBLite consensus disorder prediction 407 429 - -
Car17g01171 456 MobiDBLite consensus disorder prediction 437 456 - -
Car17g01171 456 Pfam Protein tyrosine and serine/threonine kinase 101 372 IPR001245 GO:0004672|GO:0006468
Car17g01171 456 MobiDBLite consensus disorder prediction 16 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g01171 Car-Chr17:8994756 Car17g01306 Car-Chr17:9830000 1.74E-171 dispersed
Car17g01171 Car-Chr17:8994756 Car08g00059 Car-Chr8:350957 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89491 PF07714 PK_Tyr_Ser-Thr 4.90E-46 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01171 - - csv:101222872 714.916