Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01198 ATGGAGAACCAATTCTTCCTCAATGCTACTGGAATTCCTCAATCTCTCATGCATTTCGATTCCAATCCTTCCATGGCGACCTGGCACCACCAGTTTTCGTCGTCCGCCATGGATGTTCCGCCTCAACCTCATCTTCCAGACCTTACTCACTGTTCTTCCTCTCATCAATCGCCACCGGATTGTTTTCTCAATCCAGTTCCTGATCAGAGCTTCCAATTCGATTCGGCTCTGAGTTCGATGGTTTCTTCTCCAGCGGCCTCGAATTCAAACCTAACTAATGAAAGCTTCGTGATCAGACAACTGATCGGGAAATTAGGCGGGAATTCCGAGGGAAGAATCTTGGAATTGAATTCTACTGCCGCATTGACTCCTTCTTCGAGTGTGGCGGAATTTACGTCCGATCCTGGATTGGCAGAACGAGCTGCTAGGTTTTCGTGTTTTGGAAGTAGGAGCTTCAATGACCGTCAATTGACGAACGAATTCGGTAATTACAGATCTCACCTTCCGATTGCTACCGAGAAATTAAGCCGTGTTTCGAGTAGTCCGTCGATCAAAGCCCTCGGATCTGAAACGAATTTGCTAGAACAACACAAGAACAATTCCTCATCGCATGAAGATGAATCGTCTCTCTCGAATCCGGACAAGGCGATTCCGAATCCACGGAAGAGAAAGGCAATTACAAAGGCGAAACTCAAAGAACCGATAGTTGAAGCTCCCGAAAAGGAAATTCCAAAGAAACTGAAAGCAGTGGAACCAAAGGAAAACGAAAAAGGAAACATGAAAACGGAAGAGGATTCGCAGAAAATCGATGAGAAAACAGCGGAAGAGAAGCAAACAAAGGAGAATTCCAAGCCTCCAGAACCTCCAAAAGATTATATTCATGTCAGAGCAAGAAGAGGGCAAGCAACTGATAGCCATAGCCTTGCTGAAAGAGTTAGAAGAGAGAAAATCAGCGAAAGAATGAAACTCCTTCAAGATCTCGTACCAGGTTGCAACAAGGTAACTGGAAAAGCCCTCATGCTGGATGAGATTATCAACTATGTGCAGTCATTACAACACCAAGTTGAGTTTCTATCCATGAAGTTGGCTTCTGTGAATACAACCACCACCCGGGTGGATTTCAACGTGGATTCTCTCATCTCAAAACAAATGTACGAATCGGGCACCAGTTTAAGACATCCACAAATTTCCCCAATAGAATCCTCAGGTTCAAGGTTCTATGGGCACACAAATCCCTCTCTCCCAACCACTTCTCATTGCTCTGTGGACCCTTTGGACTCTGTTTTACGCCAAAATCTTCCCATTCAACACCCTCCTTCTCTCAACTCATCCTTCCCCCAAAATCATCCCTCTCAGTATCGAAGTTTCGGGGAAGACGAGCTTCAAAGCATGGTTCAAATGGGGTTCGTCCAAAACCAGACGCAAAACTTCAACATAGGTAATCATGCAGGGTCAGAGCAAATGAAAATTGAACTATGA 1479 44.96 MENQFFLNATGIPQSLMHFDSNPSMATWHHQFSSSAMDVPPQPHLPDLTHCSSSHQSPPDCFLNPVPDQSFQFDSALSSMVSSPAASNSNLTNESFVIRQLIGKLGGNSEGRILELNSTAALTPSSSVAEFTSDPGLAERAARFSCFGSRSFNDRQLTNEFGNYRSHLPIATEKLSRVSSSPSIKALGSETNLLEQHKNNSSSHEDESSLSNPDKAIPNPRKRKAITKAKLKEPIVEAPEKEIPKKLKAVEPKENEKGNMKTEEDSQKIDEKTAEEKQTKENSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTTTRVDFNVDSLISKQMYESGTSLRHPQISPIESSGSRFYGHTNPSLPTTSHCSVDPLDSVLRQNLPIQHPPSLNSSFPQNHPSQYRSFGEDELQSMVQMGFVQNQTQNFNIGNHAGSEQMKIEL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9166817 9169358 + Carg11469-RA Car17g01198 165570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01198 492 MobiDBLite consensus disorder prediction 229 292 - -
Car17g01198 492 Pfam Helix-loop-helix DNA-binding domain 305 352 IPR011598 GO:0046983
Car17g01198 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 301 351 IPR011598 GO:0046983
Car17g01198 492 MobiDBLite consensus disorder prediction 199 221 - -
Car17g01198 492 MobiDBLite consensus disorder prediction 391 418 - -
Car17g01198 492 MobiDBLite consensus disorder prediction 195 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00257 Car-Chr2:1749504 Car17g01198 Car-Chr17:9166817 8.98E-46 dispersed
Car06g01366 Car-Chr6:9828555 Car17g01198 Car-Chr17:9166817 2.01E-84 dispersed
Car14g01350 Car-Chr14:11392293 Car17g01198 Car-Chr17:9166817 8.89E-73 dispersed
Car17g01198 Car-Chr17:9166817 Car19g00518 Car-Chr19:6820800 2.19E-46 dispersed
Car18g00037 Car-Chr18:164214 Car17g01198 Car-Chr17:9166817 4.44E-36 dispersed
Car17g01198 Car-Chr17:9166817 Car08g00218 Car-Chr8:1369372 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5101 PF00010 HLH 3.70E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01198 - - cmax:111488239 939.873